Co-expression analysis

Gene ID Contig2857_at
Gene name
Homology with ArabidopsisSimilar to At1g66680: AR401 (HF=4e-3)
Module size 6 genes
NF 0.63
%ile 84.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.88Contig2857_atContig2857--4e-3At1g66680AR401O.I.H.G.S.X.
0.6784.70.85Contig4811_atContig4811--5e-3At2g45750dehydration-responsive family proteinO.I.H.G.S.X.
0.5572.00.88Contig2858_s_atContig2858--1e-3At1g66680AR401O.I.H.G.S.X.
0.5066.90.88Contig11077_atContig11077--7e+0At5g65320basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4458.90.87Contig14526_atContig14526--2e-16At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.
0.4053.10.88Contig4810_atContig4810--2e-2At4g00750dehydration-responsive family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
6.198.0GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.297.4GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.097.2GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.796.9GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0121100, orthologous to the query gene, Contig2857_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7893.4Os01g0121100At1g66680-AR4016e-1At3g27230-O.I.H.G.S.X.
0.4051.1Os09g0434000At1g66680-FYVE/PHD zinc finger domain containing protein9e-30At3g43240ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.4051.1Os05g0126300At1g66680-Conserved hypothetical protein1e-2At3g57740protein kinase family proteinO.I.H.G.S.X.
0.3644.0Os03g0326300At1g66680-Zn-finger, RING domain containing protein6e-2At3g47980integral membrane HPP family proteinO.I.H.G.S.X.
0.3338.8Os03g0213300At1g66680-Hypothetical protein7e-1At1g47495unknown proteinO.I.H.G.S.X.
0.3338.8Os04g0550400At1g66680-Conserved hypothetical protein4e-1At2g44950HUB1 (HISTONE MONO-UBIQUITINATION 1)O.I.H.G.S.X.
0.2321.2Os03g0239400At1g66680-Basic-leucine zipper (bZIP) transcription factordomain containing protein2e-2At1g32150bZIP transcription factor family proteinO.I.H.G.S.X.
0.149.3Os03g0223700At1g66680-ARM repeat fold domain containing protein2e-49At2g01690bindingO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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