Co-expression analysis

Gene ID Contig2849_at
Gene name
Homology with ArabidopsisSimilar to At1g23170: unknown protein (HF=2e-1)
Module size 21 genes
NF 0.67
%ile 88.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.96Contig2849_atContig2849--2e-1At1g23170unknown proteinO.I.H.G.S.X.
0.7891.20.97Contig15472_atContig15472--1e+1At5g43170AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)O.I.H.G.S.X.
0.7589.50.98Contig19361_atContig19361--1e+0At2g29045LCR62 (Low-molecular-weight cysteine-rich 62)O.I.H.G.S.X.
0.7489.10.98Contig19362_atContig19362--2e+0At5g19340unknown proteinO.I.H.G.S.X.
0.7287.40.98Contig18195_atContig18195--7e+0At3g56500serine-rich protein-relatedO.I.H.G.S.X.
0.6885.10.97HI02E24u_s_atHI02E24u--8e-36At2g36620RPL24A (ribosomal protein L24)O.I.H.G.S.X.
0.6784.70.97Contig13661_atContig13661--2e+0At2g32885-O.I.H.G.S.X.
0.6784.70.97Contig5455_s_atContig5455--4e+0At2g11005glycine-rich proteinO.I.H.G.S.X.
0.6784.70.98Contig23027_atContig23027--1e-1At3g26790FUS3 (FUSCA 3)O.I.H.G.S.X.
0.6784.70.98Contig3923_atContig3923--4e-1At3g04460PEX12O.I.H.G.S.X.
0.6581.40.98Contig13430_s_atContig13430--6e-5At5g21930PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2)O.I.H.G.S.X.
0.6581.40.97Contig4291_atContig4291--2e-26At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.6480.90.97Contig25239_atContig25239--6e-1At2g18380transcription factorO.I.H.G.S.X.
0.6480.90.97Contig24618_atContig24618--3e-1At5g13180ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)O.I.H.G.S.X.
0.6279.10.98Contig18503_atContig18503--1e-1At4g01995unknown proteinO.I.H.G.S.X.
0.6077.30.97rbags1i23_s_atrbags1i23--2e-16At1g6743060S ribosomal protein L17 (RPL17B)O.I.H.G.S.X.
0.5874.90.97Contig14871_atContig14871--2e+0At5g41614unknown proteinO.I.H.G.S.X.
0.5774.90.98Contig23438_atContig23438--2e+0At1g5786060S ribosomal protein L21O.I.H.G.S.X.
0.5674.30.97Contig23141_atContig23141--1e+0At2g42610LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)O.I.H.G.S.X.
0.5268.30.97baak12b08_s_atbaak12b08--2e-8At2g4346060S ribosomal protein L38 (RPL38A)O.I.H.G.S.X.
0.5167.50.98Contig19788_atContig19788--3e-1At4g26840SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.194.1GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.993.4GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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