Co-expression analysis

Gene ID	Contig2742_at
Gene name
Homology with Arabidopsis	Similar to At3g27070: TOM20-1 (translocase outer membrane 20-1) (HF=2e+0)
Module size	13 genes
NF	0.06
%ile	8.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.4	0.83	Contig2742_at	Contig2742	-	-	2e+0	At3g27070	TOM20-1 (translocase outer membrane 20-1)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.90	Contig331_x_at	Contig331	-	-	8e-39	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.84	Contig5339_s_at	Contig5339	-	-	3e-2	At2g16015	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.91	Contig672_at	Contig672	-	-	2e-30	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.90	HS09B02u_s_at	HS09B02u	-	-	5e-8	At1g54290	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.92	Contig13917_at	Contig13917	-	-	2e-13	At5g63370	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.90	Contig2419_s_at	Contig2419	-	-	3e-7	At1g54290	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	HZ01D23u_s_at	HZ01D23u	-	-	4e+0	At1g05900	endonuclease-related	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.91	Contig25262_at	Contig25262	-	-	1e+0	At5g44150	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.91	Contig17102_at	Contig17102	-	-	2e+0	At4g30250	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.91	Contig10463_at	Contig10463	-	-	4e-1	At5g28690	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.90	Contig5243_at	Contig5243	-	-	2e-2	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.90	Contig7937_s_at	Contig7937	-	-	1e-3	At5g11720	alpha-glucosidase 1 (AGLU1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	98.0	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.7	95.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.5	95.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.2	94.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.0	93.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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