Co-expression analysis

Gene ID	Contig2737_at
Gene name
Homology with Arabidopsis	Similar to At4g22100: BGLU3 (BETA GLUCOSIDASE 2) (HF=9e-1)
Module size	6 genes
NF	0.52
%ile	72.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.89	Contig2737_at	Contig2737	-	-	9e-1	At4g22100	BGLU3 (BETA GLUCOSIDASE 2)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.90	HVSMEg0017L02r2_at	HVSMEg0017L02r2	-	-	4e+0	At4g17670	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	Contig7596_at	Contig7596	-	-	6e-8	At1g64790	binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	HS16L14r_s_at	HS16L14r	-	-	3e-1	At2g40650	pre-mRNA splicing factor PRP38 family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.88	Contig5837_at	Contig5837	-	-	1e-34	At1g15750	TPL (TOPLESS)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.90	Contig8330_at	Contig8330	-	-	2e-13	At5g47720	acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.5	98.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.6	97.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.3	97.4	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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