Co-expression analysis

Gene ID	Contig2736_s_at
Gene name
Homology with Arabidopsis	Similar to At1g02850: BGLU11 (BETA GLUCOSIDASE 11) (HF=3e-4)
Module size	7 genes
NF	0.20
%ile	24.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.78	Contig2736_s_at	Contig2736	-	-	3e-4	At1g02850	BGLU11 (BETA GLUCOSIDASE 11)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.82	Contig14793_at	Contig14793	-	-	1e+0	At5g36100	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.89	Contig5837_at	Contig5837	-	-	1e-34	At1g15750	TPL (TOPLESS)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.84	Contig7211_at	Contig7211	-	-	1e-2	At1g76940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.81	Contig12158_at	Contig12158	-	-	1e-1	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.83	Contig10424_at	Contig10424	-	-	2e-14	At3g49350	RAB GTPase activator	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.84	Contig18926_at	Contig18926	-	-	5e-1	At5g37720	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.2	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.1	96.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.1	94.1	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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