Co-expression analysis

Gene ID	Contig2722_at
Gene name
Homology with Arabidopsis	Similar to At2g33040: ATP synthase gamma chain, mitochondrial (ATPC) (HF=2e-32)
Module size	21 genes
NF	0.16
%ile	19.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	0.90	Contig2722_at	Contig2722	-	-	2e-32	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig1326_s_at	Contig1326	-	-	7e-2	At1g22885	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig333_M_at	Contig333_M	-	-			-	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig24431_at	Contig24431	-	-	4e+0	At1g11475	NRPB10	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig10570_at	Contig10570	-	-	6e-8	At4g38250	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig7314_at	Contig7314	-	-	5e-3	At1g76970	VHS domain-containing protein / GAT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig3645_at	Contig3645	-	-	7e-9	At5g55850	NOI	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig8444_at	Contig8444	-	-	3e-6	At2g28250	NCRK	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig20398_at	Contig20398	-	-	8e-3	At2g42620	MAX2 (MORE AXILLARY BRANCHES 2)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig23393_at	Contig23393	-	-	3e-1	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	HA11F23u_at	HA11F23u	-	-	1e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig6423_at	Contig6423	-	-	1e-3	At2g34040	apoptosis inhibitory 5 (API5) family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.92	Contig3361_at	Contig3361	-	-	8e-4	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig8766_at	Contig8766	-	-	8e-7	At4g12130	aminomethyltransferase	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	HU09N18u_s_at	HU09N18u	-	-	2e+0	At1g09370	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.96	Contig10647_at	Contig10647	-	-	2e-46	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.96	HVSMEm0005B12r2_at	HVSMEm0005B12r2	-	-	3e-1	At3g23727	SCRL12 (SCR-Like 12)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig16119_at	Contig16119	-	-	8e+0	Atcg01060	-	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig23773_at	Contig23773	-	-	1e+0	At5g14070	ROXY2	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig13216_at	Contig13216	-	-	1e-5	At3g12620	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.94	Contig13674_at	Contig13674	-	-	2e+0	At5g17073	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.7	98.3	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.7	96.9	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.2	94.3	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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