Co-expression analysis

Gene ID Contig2718_s_at
Gene name
Homology with ArabidopsisSimilar to At3g25230: ROF1 (ROTAMASE FKBP 1) (HF=4e-27)
Module size 6 genes
NF 0.57
%ile 79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.93Contig2718_s_atContig2718--4e-27At3g25230ROF1 (ROTAMASE FKBP 1)O.I.H.G.S.X.
0.5066.90.93Contig13233_atContig13233--5e-1At2g42260UVI4 (UV-B-INSENSITIVE 4)O.I.H.G.S.X.
0.5066.90.93Contig9794_atContig9794--4e-1At5g61030GR-RBP3 (glycine-rich RNA-binding protein 3)O.I.H.G.S.X.
0.5066.90.93Contig2717_atContig2717--5e-12At5g48570peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putativeO.I.H.G.S.X.
0.5066.90.95Contig9793_atContig9793--8e-26At1g61140EDA16 (embryo sac development arrest 16)O.I.H.G.S.X.
0.5066.90.95HVSMEb0006I05f_x_atHVSMEb0006I05f--8e-1At5g19930integral membrane family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.099.4GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.898.3GSM398281Moroc9-75_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.297.4GSM398280Moroc9-75_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.897.0GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.696.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.596.7GSM398279Moroc9-75_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.496.6GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.496.6GSM398282Moroc9-75_5d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.496.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.396.4GSM130806JA and salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1609010_at, orthologous to the query gene, Contig2718_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8695.11609010_atAt3g25230hypothetical protein LOC100266654-4e-34At5g48570peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putativeO.I.H.G.S.X.
0.3650.71607559_atAt3g25230hypothetical protein LOC100243367-4e+0At2g31370bZIP transcription factor (POSF21)O.I.H.G.S.X.
0.1111.31610720_atAt3g25230hypothetical protein LOC100243517-2e-15At5g53800unknown proteinO.I.H.G.S.X.
0.045.21620532_atAt3g25230hypothetical protein LOC100240981-2e-43At5g13610unknown proteinO.I.H.G.S.X.
0.034.21619281_atAt3g25230hypothetical protein LOC100257172-5e-1At3g57080NRPE5O.I.H.G.S.X.
0.023.21612868_atAt3g25230hypothetical protein LOC100254737-7e-81At3g0920060S acidic ribosomal protein P0 (RPP0B)O.I.H.G.S.X.
0.023.21618193_atAt3g25230--9e-1At5g59160TOPP2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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