Co-expression analysis

Gene ID Contig2718_s_at
Gene name
Homology with ArabidopsisSimilar to At3g25230: ROF1 (ROTAMASE FKBP 1) (HF=4e-27)
Module size 6 genes
NF 0.57
%ile 79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.93Contig2718_s_atContig2718--4e-27At3g25230ROF1 (ROTAMASE FKBP 1)O.I.H.G.S.X.
0.5066.90.93Contig13233_atContig13233--5e-1At2g42260UVI4 (UV-B-INSENSITIVE 4)O.I.H.G.S.X.
0.5066.90.93Contig9794_atContig9794--4e-1At5g61030GR-RBP3 (glycine-rich RNA-binding protein 3)O.I.H.G.S.X.
0.5066.90.93Contig2717_atContig2717--5e-12At5g48570peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putativeO.I.H.G.S.X.
0.5066.90.95Contig9793_atContig9793--8e-26At1g61140EDA16 (embryo sac development arrest 16)O.I.H.G.S.X.
0.5066.90.95HVSMEb0006I05f_x_atHVSMEb0006I05f--8e-1At5g19930integral membrane family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.099.4GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.898.3GSM398281Moroc9-75_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.297.4GSM398280Moroc9-75_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.897.0GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.696.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.596.7GSM398279Moroc9-75_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.496.6GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.496.6GSM398282Moroc9-75_5d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.496.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.396.4GSM130806JA and salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0491400, orthologous to the query gene, Contig2718_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5573.7Os02g0491400At3g25230-Peptidylprolyl isomerase7e-27At3g25230ROF1 (ROTAMASE FKBP 1)O.I.H.G.S.X.
0.5068.0Os06g0703800At3g25230-Conserved hypothetical protein2e+0At5g58110ATPase activator/ chaperone bindingO.I.H.G.S.X.
0.2219.4Os02g0139100At3g25230-Conserved hypothetical protein5e-1At5g58110ATPase activator/ chaperone bindingO.I.H.G.S.X.
0.2117.9Os04g0576800At3g25230-3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminaldomain containing protein9e-1At5g15780pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.
0.084.2Os03g0381300At3g25230-HSP20-like chaperone domain containing protein2e+0At1g65560allyl alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.084.2Os02g0775100At3g25230-Cation diffusion facilitator 85e-4At3g58060cation efflux family protein / metal tolerance protein, putative (MTPc3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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