Co-expression analysis

Gene ID Contig2718_s_at
Gene name
Homology with ArabidopsisSimilar to At3g25230: ROF1 (ROTAMASE FKBP 1) (HF=4e-27)
Module size 6 genes
NF 0.57
%ile 79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.93Contig2718_s_atContig2718--4e-27At3g25230ROF1 (ROTAMASE FKBP 1)O.I.H.G.S.X.
0.5066.90.93Contig13233_atContig13233--5e-1At2g42260UVI4 (UV-B-INSENSITIVE 4)O.I.H.G.S.X.
0.5066.90.93Contig9794_atContig9794--4e-1At5g61030GR-RBP3 (glycine-rich RNA-binding protein 3)O.I.H.G.S.X.
0.5066.90.93Contig2717_atContig2717--5e-12At5g48570peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putativeO.I.H.G.S.X.
0.5066.90.95Contig9793_atContig9793--8e-26At1g61140EDA16 (embryo sac development arrest 16)O.I.H.G.S.X.
0.5066.90.95HVSMEb0006I05f_x_atHVSMEb0006I05f--8e-1At5g19930integral membrane family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.099.4GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.898.3GSM398281Moroc9-75_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.297.4GSM398280Moroc9-75_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.897.0GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.696.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.596.7GSM398279Moroc9-75_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.496.6GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.496.6GSM398282Moroc9-75_5d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.496.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.396.4GSM130806JA and salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.81432.2.S1_at, orthologous to the query gene, Contig2718_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.2GmaAffx.81432.2.S1_atAt3g25230--2e-45At3g25230ROF1 (ROTAMASE FKBP 1)O.I.H.G.S.X.
0.3346.1GmaAffx.4882.2.S1_atAt3g25230--2e-17At1g18800NRP2 (NAP1-RELATED PROTEIN 2)O.I.H.G.S.X.
0.2735.7GmaAffx.75546.1.S1_atAt3g25230--1e-49At3g02760ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.2329.9GmaAffx.68649.1.S1_atAt3g25230--1e-32At5g26360chaperonin, putativeO.I.H.G.S.X.
0.1721.2GmaAffx.81432.1.S1_atAt3g25230--1e-37At3g25230ROF1 (ROTAMASE FKBP 1)O.I.H.G.S.X.
0.1417.5GmaAffx.80075.1.S1_atAt3g25230--3e-17At4g15640unknown proteinO.I.H.G.S.X.
0.1316.3GmaAffx.31741.1.S1_atAt3g25230--4e-46At3g28730ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP)O.I.H.G.S.X.
0.1114.2GmaAffx.91182.1.S1_s_atAt3g25230--6e-83At5g0709040S ribosomal protein S4 (RPS4B)O.I.H.G.S.X.
0.1013.0Gma.7504.2.S1_a_atAt3g25230--8e-1At5g46160ribosomal protein L14 family protein / huellenlos paralog (HLP)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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