Co-expression analysis

Gene ID	Contig2718_s_at
Gene name
Homology with Arabidopsis	Similar to At3g25230: ROF1 (ROTAMASE FKBP 1) (HF=4e-27)
Module size	6 genes
NF	0.57
%ile	79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.93	Contig2718_s_at	Contig2718	-	-	4e-27	At3g25230	ROF1 (ROTAMASE FKBP 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig13233_at	Contig13233	-	-	5e-1	At2g42260	UVI4 (UV-B-INSENSITIVE 4)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig9794_at	Contig9794	-	-	4e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig2717_at	Contig2717	-	-	5e-12	At5g48570	peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig9793_at	Contig9793	-	-	8e-26	At1g61140	EDA16 (embryo sac development arrest 16)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	HVSMEb0006I05f_x_at	HVSMEb0006I05f	-	-	8e-1	At5g19930	integral membrane family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.0	99.4	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.8	98.3	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.8	97.0	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.6	96.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM398279	Moroc9-75_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.81432.2.S1_at, orthologous to the query gene, Contig2718_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.2	GmaAffx.81432.2.S1_at	At3g25230	-	-	2e-45	At3g25230	ROF1 (ROTAMASE FKBP 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.4882.2.S1_at	At3g25230	-	-	2e-17	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.75546.1.S1_at	At3g25230	-	-	1e-49	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.68649.1.S1_at	At3g25230	-	-	1e-32	At5g26360	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.81432.1.S1_at	At3g25230	-	-	1e-37	At3g25230	ROF1 (ROTAMASE FKBP 1)	O.I.	H.G.	S.X.	Please select
0.14	17.5	GmaAffx.80075.1.S1_at	At3g25230	-	-	3e-17	At4g15640	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	GmaAffx.31741.1.S1_at	At3g25230	-	-	4e-46	At3g28730	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP)	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.91182.1.S1_s_at	At3g25230	-	-	6e-83	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.7504.2.S1_a_at	At3g25230	-	-	8e-1	At5g46160	ribosomal protein L14 family protein / huellenlos paralog (HLP)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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