Co-expression analysis

Gene ID Contig2712_at
Gene name
Homology with ArabidopsisSimilar to At2g44920: thylakoid lumenal 15 kDa protein, chloroplast (HF=6e-2)
Module size 6 genes
NF 0.31
%ile 41.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.83Contig2712_atContig2712--6e-2At2g44920thylakoid lumenal 15 kDa protein, chloroplastO.I.H.G.S.X.
0.5369.70.84HVSMEh0093D14f_atHVSMEh0093D14f--3e+0At5g53190nodulin MtN3 family proteinO.I.H.G.S.X.
0.5066.90.88Contig670_atContig670--7e-1At4g35725unknown proteinO.I.H.G.S.X.
0.4053.10.84Contig2710_s_atContig2710--2e+0At2g26590adhesion regulating molecule familyO.I.H.G.S.X.
0.1514.10.82Contig11794_atContig11794--8e-1At5g38740AGL77 (AGAMOUS-LIKE 77)O.I.H.G.S.X.
0.097.40.85Contig12771_atContig12771--9e-15At5g10940transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.499.8GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
25.799.8GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.899.1GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
6.798.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.797.7GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.197.3GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
5.097.2GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.997.1GSM440973Stressed awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.897.0GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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