Co-expression analysis

Gene ID	Contig2704_s_at
Gene name
Homology with Arabidopsis	Similar to At5g47175: LCR3 (Low-molecular-weight cysteine-rich 3) (HF=9e-1)
Module size	6 genes
NF	0.63
%ile	85.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig2704_s_at	Contig2704	-	-	9e-1	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.93	Contig8303_at	Contig8303	-	-	7e+0	At5g38400	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig15990_at	Contig15990	-	-	7e+0	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.93	Contig15087_at	Contig15087	-	-	8e-3	At5g14390	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.94	EBed02_SQ002_A05_at	EBed02_SQ002_A05	-	-	1e+1	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig7953_at	Contig7953	-	-	3e-28	At2g03510	band 7 family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
48.3	99.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.0	99.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.2	94.3	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5	91.9	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.2481.1.S1_at, orthologous to the query gene, Contig2704_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	PtpAffx.2481.1.S1_at	At5g47175	-	-	3e+0	At3g06330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.7974.1.S1_at	At5g47175	-	-	1e-66	At5g10400	histone H3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.221423.1.S1_at	At5g47175	nbs-lrr resistance protein	-	1e+0	At3g05327	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.221971.1.S1_at	At5g47175	hypothetical protein	-	2e-9	At3g50940	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.201746.1.S1_at	At5g47175	hypothetical protein	-	8e-1	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.214925.1.S1_at	At5g47175	hypothetical protein	-	3e-2	At1g16160	WAKL5 (wall associated kinase-like 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.203211.1.S1_at	At5g47175	hypothetical protein	-	1e-3	At4g23020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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