Co-expression analysis

Gene ID	Contig2700_x_at
Gene name
Homology with Arabidopsis	Similar to At1g23890: NHL repeat-containing protein (HF=1e+0)
Module size	12 genes
NF	0.56
%ile	76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.96	Contig2700_x_at	Contig2700	-	-	1e+0	At1g23890	NHL repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.96	Contig4296_at	Contig4296	-	-	5e-38	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig6203_at	Contig6203	-	-	1e-3	At1g70110	lectin protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.97	Contig5724_at	Contig5724	-	-	4e-12	At1g06570	PDS1 (PHYTOENE DESATURATION 1)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig6910_at	Contig6910	-	-	9e-4	At5g43590	patatin, putative	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.97	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.97	Contig3794_at	Contig3794	-	-	7e-31	At1g16890	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.97	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.97	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.97	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.3	90.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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