Co-expression analysis

Gene ID	Contig2688_s_at
Gene name
Homology with Arabidopsis	Similar to At5g08530: CI51 (51 kDa subunit of complex I) (HF=1e-59)
Module size	6 genes
NF	0.56
%ile	78.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.89	Contig2688_s_at	Contig2688	-	-	1e-59	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.86	Contig8289_s_at	Contig8289	-	-	1e-3	At2g30880	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.84	HVSMEf0019H18r2_at	HVSMEf0019H18r2	-	-	1e-2	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.89	HVSMEg0017L02r2_at	HVSMEg0017L02r2	-	-	4e+0	At4g17670	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.87	Contig5837_at	Contig5837	-	-	1e-34	At1g15750	TPL (TOPLESS)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.90	Contig2351_at	Contig2351	-	-	2e-7	At4g17830	peptidase M20/M25/M40 family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.5	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.4	97.5	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.4	97.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.0	96.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
3.6	95.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.6	95.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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