Co-expression analysis

Gene ID	Contig26512_at
Gene name
Homology with Arabidopsis	Similar to At1g08090: ATNRT2:1 (NITRATE TRANSPORTER 2:1) (HF=2e-13)
Module size	6 genes
NF	0.45
%ile	63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.81	Contig26512_at	Contig26512	-	-	2e-13	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.85	HT11N18r_s_at	HT11N18r	-	-	1e+0	At1g16025	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.85	Contig15721_at	Contig15721	-	-	1e+0	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.85	Contig18_s_at	Contig18	-	-	8e-2	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.83	Contig1321_at	Contig1321	-	-	3e-88	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.82	Contig5198_at	Contig5198	-	-	5e+0	At4g02130	GATL6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	98.9	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.3	98.8	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.9	95.8	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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