Co-expression analysis

Gene ID	Contig26498_at
Gene name
Homology with Arabidopsis	Similar to At4g00960: protein kinase family protein (HF=2e-2)
Module size	11 genes
NF	0.40
%ile	54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	62.2	0.92	Contig26498_at	Contig26498	-	-	2e-2	At4g00960	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.95	Contig8406_at	Contig8406	-	-	4e-2	At3g10040	transcription factor	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.94	Contig10941_at	Contig10941	-	-	2e-1	At3g48340	cysteine-type endopeptidase/ cysteine-type peptidase	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig10315_at	Contig10315	-	-	1e+0	At4g24015	zinc finger (RING-H2 type) protein-related	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig12779_at	Contig12779	-	-	2e-2	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig9868_at	Contig9868	-	-	1e-18	At2g36895	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig12580_at	Contig12580	-	-	1e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig17228_at	Contig17228	-	-	1e+0	At3g44070	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig863_s_at	Contig863	-	-	3e-6	At3g02720	DJ-1 family protein / protease-related	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig10185_at	Contig10185	-	-	8e-1	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig8375_at	Contig8375	-	-	1e-37	At3g23300	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	99.5	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
11.4	99.3	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.6	96.8	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.6	96.8	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.6	95.3	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.2	94.3	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.1	94.1	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.1	94.1	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.6	92.3	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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