Co-expression analysis

Gene ID	Contig26495_at
Gene name
Homology with Arabidopsis	Similar to At5g27430: signal peptidase subunit family protein (HF=6e-5)
Module size	19 genes
NF	0.51
%ile	71.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.8	0.79	Contig26495_at	Contig26495	-	-	6e-5	At5g27430	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.81	Contig9770_at	Contig9770	-	-	1e-14	At4g21160	ZAC	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.82	Contig1579_s_at	Contig1579	-	-	3e-1	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.85	Contig10720_at	Contig10720	-	-	1e-39	At1g22620	ATSAC1 (suppressor of actin 1)	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.85	EBro02_SQ006_L04_x_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.83	Contig14778_at	Contig14778	-	-	7e-10	At4g17640	CKB2	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.85	HI05D22u_at	HI05D22u	-	-	7e-2	At5g58860	CYP86A1 (CYTOCHROME P450 86 A1)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.85	Contig15571_at	Contig15571	-	-	3e+0	Atcg00360	-	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.85	Contig17530_at	Contig17530	-	-	6e-3	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.85	Contig20512_s_at	Contig20512	-	-	1e+0	At1g24430	transferase/ transferase, transferring acyl groups other than amino-acyl groups	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.83	Contig25491_at	Contig25491	-	-	1e+0	At5g09960	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.86	HM02K20r_at	HM02K20r	-	-	3e+0	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.84	Contig1752_s_at	Contig1752	-	-	3e-7	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.84	EBro02_SQ006_L04_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.91	Contig21980_at	Contig21980	-	-	1e-1	At3g24450	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.83	Contig19293_at	Contig19293	-	-	5e-1	At1g19960	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.85	Contig24099_at	Contig24099	-	-	5e+0	At4g28060	cytochrome c oxidase subunit 6b, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.84	Contig13241_at	Contig13241	-	-	2e+0	At2g06570	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.87	HVSMEl0002J05r2_at	HVSMEl0002J05r2	-	-	5e+0	At5g37730	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.7	96.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.3	94.6	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.0	93.8	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
2.9	93.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.8	93.1	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.8	93.1	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.5	91.9	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage