CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig26400_at

Gene name
Homology with Arabidopsis Similar to At5g63040: unknown protein (HF=2e-5)

Module size 6 genes

NF 0.61

%ile 83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.90 Contig26400_at Contig26400 - - 2e-5 At5g63040 unknown protein O.I. H.G. S.X.
0.60 77.3 0.88 Contig26424_at Contig26424 - - 4e+0 At5g13240 transcription regulator O.I. H.G. S.X.
0.50 66.9 0.94 HVSMEn0020I19r2_at HVSMEn0020I19r2 - - 2e+0 At1g72290 trypsin and protease inhibitor family protein / Kunitz family protein O.I. H.G. S.X.
0.44 58.9 0.91 Contig6353_at Contig6353 - - 3e+0 At5g63230 - O.I. H.G. S.X.
0.44 58.9 0.92 Contig2421_at Contig2421 - - 7e-2 At5g02380 MT2B (METALLOTHIONEIN 2B) O.I. H.G. S.X.
0.36 47.1 0.93 Contig14353_at Contig14353 - - 9e-3 At1g49950 DNA-binding protein, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.87	Contig9569_at	Contig9569	-	-	4e-2	At3g30845	unknown protein	O.I.	H.G.	S.X.
0.43	56.4	0.89	Contig15377_at	Contig15377	-	-	6e-19	At2g34140	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.40	53.1	0.88	Contig1390_3_s_at	Contig1390_3	actin	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.
0.33	42.6	0.82	Contig23072_at	Contig23072	-	-	2e+0	At2g18910	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.33	42.6	0.84	HU10K22u_s_at	HU10K22u	-	-	1e+0	At3g13170	ATSPO11-1	O.I.	H.G.	S.X.
0.32	40.3	0.88	Contig4646_at	Contig4646	-	-	1e-8	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	O.I.	H.G.	S.X.
0.31	38.6	0.84	HV_CEa0009C05r2_s_at	HV_CEa0009C05r2	-	-	9e+0	At5g50175	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.86	rbaal1k11_s_at	rbaal1k11	-	-	1e+1	At4g08570	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.
0.27	32.1	0.87	Contig4639_s_at	Contig4639	-	-	3e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.
0.27	32.1	0.87	Contig14836_at	Contig14836	-	-	2e+0	At5g54760	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.
0.26	30.4	0.85	Contig18919_at	Contig18919	-	-	2e+0	At5g57510	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.1 98.7 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9 98.3 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9 98.3 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7 98.3 GSM146367 Maythorpe Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1 98.0 GSM146361 Golden Promise Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1 98.0 GSM146364 Maythorpe Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0 97.9 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8 97.8 GSM146358 Golden Promise Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0 97.2 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM146366 Maythorpe Root Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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