Co-expression analysis

Gene ID	Contig26400_at
Gene name
Homology with Arabidopsis	Similar to At5g63040: unknown protein (HF=2e-5)
Module size	6 genes
NF	0.61
%ile	83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.90	Contig26400_at	Contig26400	-	-	2e-5	At5g63040	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.88	Contig26424_at	Contig26424	-	-	4e+0	At5g13240	transcription regulator	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	HVSMEn0020I19r2_at	HVSMEn0020I19r2	-	-	2e+0	At1g72290	trypsin and protease inhibitor family protein / Kunitz family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.91	Contig6353_at	Contig6353	-	-	3e+0	At5g63230	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig2421_at	Contig2421	-	-	7e-2	At5g02380	MT2B (METALLOTHIONEIN 2B)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig14353_at	Contig14353	-	-	9e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.7	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9	98.3	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9	98.3	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7	98.3	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0	97.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0	97.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the maize gene, Zm.2635.1.A1_at, orthologous to the query gene, Contig26400_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	95.9	Zm.2635.1.A1_at	At5g63040	hypothetical protein LOC100216945	-	7e-9	At5g63040	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.1942.1.A1_at	At5g63040	-	-	7e-57	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	O.I.	H.G.	S.X.	Please select
0.51	66.4	ZmAffx.720.1.S1_at	At5g63040	-	-	2e-1	At1g11572	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.5181.1.A1_at	At5g63040	CK2 protein kinase alpha 2	-	1e-82	At2g23080	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.15685.2.S1_at	At5g63040	-	-	5e+0	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.17748.1.S1_s_at	At5g63040	protein kinase-like	-	2e+0	At1g80865	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.15523.1.A1_at	At5g63040	threonine synthase	-	6e-5	At1g72810	threonine synthase, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.6045.4.S1_at	At5g63040	hypothetical protein LOC100191419	-	5e-4	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.9535.1.A1_x_at	At5g63040	-	-	5e+0	At5g56470	FAD-dependent oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.538.1.S1_at	At5g63040	calcium exchanger1	-	1e-6	At3g51860	CAX3 (CATION EXCHANGER 3)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.469.1.A1_at	At5g63040	voltage-dependent anion channel protein 2	-	2e-4	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.17538.1.S1_at	At5g63040	hypothetical protein LOC100273692	-	1e+0	At5g50710	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.8901.1.A1_at	At5g63040	hypothetical protein LOC100192580	-	9e-3	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.2776.1.A1_at	At5g63040	asparagine synthase family protein	-	2e+0	At2g03667	asparagine synthase (glutamine-hydrolyzing)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.19096.1.A1_at	At5g63040	-	-	4e-1	At1g25340	MYB116 (myb domain protein 116)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.8505.1.A1_at	At5g63040	-	-	1e-4	At1g51870	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.5286.1.A1_at	At5g63040	ubiquitin fusion degradation protein 1	-	2e-17	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.2750.1.S1_at	At5g63040	hypothetical protein LOC100274502	-	7e-20	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.2169.1.A1_at	At5g63040	-	-	2e+0	At3g10250	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.2110.1.A1_at	At5g63040	-	-	5e-1	At3g45400	exostosin family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.7399.1.S1_at	At5g63040	hypothetical protein LOC100274088	-	1e-79	At3g07980	MAPKKK6	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.18301.1.A1_at	At5g63040	Cyclin D5,2	-	9e-2	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.18651.1.A1_at	At5g63040	hypothetical protein LOC100193552	-	2e+1	At4g18510	CLE2 (CLAVATA3/ESR-RELATED)	O.I.	H.G.	S.X.	Please select
0.16	9.4	Zm.2862.2.S1_at	At5g63040	Calnexin	-	1e-61	At5g61790	calnexin 1 (CNX1)	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.15604.1.S1_at	At5g63040	subtilisin-chymotrypsin inhibitor CI-1B	-	5e+0	At5g27440	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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