Co-expression analysis

Gene ID	Contig26400_at
Gene name
Homology with Arabidopsis	Similar to At5g63040: unknown protein (HF=2e-5)
Module size	6 genes
NF	0.61
%ile	83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.90	Contig26400_at	Contig26400	-	-	2e-5	At5g63040	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.88	Contig26424_at	Contig26424	-	-	4e+0	At5g13240	transcription regulator	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	HVSMEn0020I19r2_at	HVSMEn0020I19r2	-	-	2e+0	At1g72290	trypsin and protease inhibitor family protein / Kunitz family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.91	Contig6353_at	Contig6353	-	-	3e+0	At5g63230	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig2421_at	Contig2421	-	-	7e-2	At5g02380	MT2B (METALLOTHIONEIN 2B)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig14353_at	Contig14353	-	-	9e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.7	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9	98.3	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9	98.3	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7	98.3	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0	97.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0	97.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the grape gene, 1608595_at, orthologous to the query gene, Contig26400_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	1608595_at	At5g63040	-	-	1e+0	At4g04580	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.60	81.9	1618934_at	At5g63040	hypothetical protein LOC100264485	-	3e-20	At5g23890	-	O.I.	H.G.	S.X.	Please select
0.58	79.8	1616023_at	At5g63040	hypothetical protein LOC100252512	-	1e-38	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.56	79.4	1614356_at	At5g63040	-	-	6e-1	At1g07880	ATMPK13	O.I.	H.G.	S.X.	Please select
0.55	77.3	1620802_at	At5g63040	similar to putative pyruvate dehydrogenase E1 alpha subunit	-	3e-89	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	O.I.	H.G.	S.X.	Please select
0.52	73.9	1609080_at	At5g63040	hypothetical protein LOC100265018	-	9e-21	At5g54440	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1608879_s_at	At5g63040	hypothetical protein LOC100265837	-	2e-1	At2g20920	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	1611474_at	At5g63040	hypothetical protein LOC100240955	-	1e-1	At3g27340	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1620211_at	At5g63040	hypothetical protein LOC100261483	-	1e+0	At3g07565	DNA binding	O.I.	H.G.	S.X.	Please select
0.44	64.1	1615727_at	At5g63040	hypothetical protein LOC100261981	-	9e-2	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.43	61.5	1612332_at	At5g63040	-	-	2e-21	At1g08110	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	1617145_at	At5g63040	-	-	2e+0	At5g52210	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1615943_at	At5g63040	hypothetical protein LOC100266273	-	5e-14	At1g51980	mitochondrial processing peptidase alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.39	54.9	1619028_at	At5g63040	hypothetical protein LOC100248919	-	3e-26	At3g60620	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1607312_at	At5g63040	hypothetical protein LOC100249902	-	5e+0	At3g12370	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1614263_at	At5g63040	hypothetical protein LOC100243902	-	3e-27	At2g44050	COS1 (COI1 SUPPRESSOR1)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1608770_at	At5g63040	-	-	6e-21	At3g60620	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1608272_at	At5g63040	hypothetical protein LOC100255032	-	3e-36	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1613094_at	At5g63040	hypothetical protein LOC100261121	-	1e-13	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1622464_at	At5g63040	hypothetical protein LOC100260728	-	3e-40	At5g54770	THI1	O.I.	H.G.	S.X.	Please select
0.28	37.7	1606902_a_at	At5g63040	hypothetical protein LOC100248362	-	2e-7	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1617099_at	At5g63040	hypothetical protein LOC100251893	-	1e+0	At5g50335	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1613506_at	At5g63040	hypothetical protein LOC100266783	-	2e-5	At2g45060	-	O.I.	H.G.	S.X.	Please select
0.23	27.5	1619591_at	At5g63040	hypothetical protein LOC100265473	-	5e-36	At5g16620	TIC40	O.I.	H.G.	S.X.	Please select
0.23	27.5	1617183_at	At5g63040	hypothetical protein LOC100258994	-	3e-19	At2g31490	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1619780_at	At5g63040	hypothetical protein LOC100261596	-	8e-25	At2g26930	ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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