CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig26400_at

Gene name
Homology with Arabidopsis Similar to At5g63040: unknown protein (HF=2e-5)

Module size 6 genes

NF 0.61

%ile 83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.90 Contig26400_at Contig26400 - - 2e-5 At5g63040 unknown protein O.I. H.G. S.X.
0.60 77.3 0.88 Contig26424_at Contig26424 - - 4e+0 At5g13240 transcription regulator O.I. H.G. S.X.
0.50 66.9 0.94 HVSMEn0020I19r2_at HVSMEn0020I19r2 - - 2e+0 At1g72290 trypsin and protease inhibitor family protein / Kunitz family protein O.I. H.G. S.X.
0.44 58.9 0.91 Contig6353_at Contig6353 - - 3e+0 At5g63230 - O.I. H.G. S.X.
0.44 58.9 0.92 Contig2421_at Contig2421 - - 7e-2 At5g02380 MT2B (METALLOTHIONEIN 2B) O.I. H.G. S.X.
0.36 47.1 0.93 Contig14353_at Contig14353 - - 9e-3 At1g49950 DNA-binding protein, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.1 98.7 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9 98.3 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9 98.3 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7 98.3 GSM146367 Maythorpe Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1 98.0 GSM146361 Golden Promise Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1 98.0 GSM146364 Maythorpe Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0 97.9 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8 97.8 GSM146358 Golden Promise Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0 97.2 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM146366 Maythorpe Root Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the rice gene, Os01g0704200, orthologous to the query gene, Contig26400_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 Os01g0704200 At5g63040 - Conserved hypothetical protein 9e-12 At5g63040 unknown protein O.I. H.G. S.X.
0.61 81.2 Os11g0490800 At5g63040 - ABC transporter related domain containing protein 3e-6 At5g14100 ATNAP14 O.I. H.G. S.X.
0.50 68.0 Os03g0174600 At5g63040 - contains InterPro domain(s): IPR004506 2e-10 At1g51310 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase O.I. H.G. S.X.
0.50 68.0 Os01g0692600 At5g63040 - Conserved hypothetical protein 1e-3 At1g15060 - O.I. H.G. S.X.
0.30 32.7 Os11g0610900 At5g63040 - Seryl-tRNA synthetase, class IIa family protein 7e-8 At1g11870 SRS (SERYL-TRNA SYNTHETASE) O.I. H.G. S.X.
0.25 24.1 Os03g0686900 At5g63040 - Hypothetical protein 8e-1 At1g61160 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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