Co-expression analysis

Gene ID	Contig26400_at
Gene name
Homology with Arabidopsis	Similar to At5g63040: unknown protein (HF=2e-5)
Module size	6 genes
NF	0.61
%ile	83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.90	Contig26400_at	Contig26400	-	-	2e-5	At5g63040	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.88	Contig26424_at	Contig26424	-	-	4e+0	At5g13240	transcription regulator	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	HVSMEn0020I19r2_at	HVSMEn0020I19r2	-	-	2e+0	At1g72290	trypsin and protease inhibitor family protein / Kunitz family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.91	Contig6353_at	Contig6353	-	-	3e+0	At5g63230	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig2421_at	Contig2421	-	-	7e-2	At5g02380	MT2B (METALLOTHIONEIN 2B)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig14353_at	Contig14353	-	-	9e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.7	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9	98.3	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9	98.3	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7	98.3	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0	97.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0	97.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.69925.1.S1_at, orthologous to the query gene, Contig26400_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.69925.1.S1_at	At5g63040	-	-	1e+0	At5g48280	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.8	GmaAffx.49140.2.A1_at	At5g63040	-	-	3e+0	At3g10760	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.7693.2.S1_at	At5g63040	-	-	6e-109	At5g06360	ribosomal protein S8e family protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.16320.1.S1_at	At5g63040	-	-	2e-3	At3g06040	ribosomal protein L12 family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.1845.1.S1_a_at	At5g63040	-	-	6e-84	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.7792.1.S1_at	At5g63040	-	-	2e-1	At1g09070	SRC2 (SOYBEAN GENE REGULATED BY COLD-2)	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.16395.1.S1_at	At5g63040	-	-	2e-11	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.8114.1.S1_at	At5g63040	-	-	4e-45	At4g19210	ATRLI2	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.12993.1.S1_at	At5g63040	-	-	3e-1	At5g42965	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.17343.1.A1_at	At5g63040	-	-	1e+0	At5g18050	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.7693.2.S1_x_at	At5g63040	-	-	6e-109	At5g06360	ribosomal protein S8e family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.12552.1.A1_at	At5g63040	-	-	2e-13	At2g36130	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.90667.1.A1_at	At5g63040	-	-	1e+1	At5g45350	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.60726.2.S1_at	At5g63040	-	-	2e-7	At5g16780	DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)	O.I.	H.G.	S.X.	Please select
0.34	47.2	GmaAffx.93025.1.S1_at	At5g63040	-	-	1e-3	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.6553.1.S1_at	At5g63040	-	-	2e-24	At1g74270	60S ribosomal protein L35a (RPL35aC)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.4125.1.S1_at	At5g63040	-	-	5e-1	At3g52520	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.3190.1.S1_at	At5g63040	-	-	6e-13	At1g65290	mtACP2 (mitochondrial acyl carrier protein 2)	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.3929.1.A1_at	At5g63040	-	-	4e-10	At5g18400	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.6228.1.S1_at	At5g63040	-	-	3e-123	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.9722.1.S1_at	At5g63040	-	-	5e-4	At1g05720	selenoprotein family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.5057.1.S1_a_at	At5g63040	-	-	2e-25	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.2876.1.S1_s_at	At5g63040	Cytosolic malate dehydrogenase	-	2e-124	At1g04410	malate dehydrogenase, cytosolic, putative	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.2259.1.S1_at	At5g63040	-	-	3e-83	At1g16470	PAB1 (PROTEASOME SUBUNIT PAB1)	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.1566.1.S1_at	At5g63040	ribosomal protein L2	-	7e-130	At2g18020	EMB2296 (embryo defective 2296)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.10577.1.S1_x_at	At5g63040	-	-	7e-49	At1g23290	RPL27AB	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.4379.3.A1_a_at	At5g63040	-	-	8e-14	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.3678.1.S1_at	At5g63040	-	-	1e-17	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.11747.2.S1_s_at	At5g63040	-	-	3e-5	At5g47210	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.2609.2.A1_at	At5g63040	-	-	3e-9	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.11190.2.S1_a_at	At5g63040	-	-	1e-81	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.69688.11.A1_s_at	At5g63040	-	-	3e+0	At2g36680	-	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.7413.1.S1_at	At5g63040	-	-	3e-2	At2g06025	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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