CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig26369_at

Gene name
Homology with Arabidopsis Similar to At4g02620: vacuolar ATPase subunit F family protein (HF=4e+0)

Module size 6 genes

NF 0.50

%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.3 0.93 Contig26369_at Contig26369 - - 4e+0 At4g02620 vacuolar ATPase subunit F family protein O.I. H.G. S.X.
0.60 77.3 0.92 Contig21865_at Contig21865 - - 9e-1 At5g45870 Bet v I allergen family protein O.I. H.G. S.X.
0.60 77.3 0.94 Contig14949_at Contig14949 - - 3e-2 At3g19100 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.57 74.9 0.93 Contig13428_at Contig13428 - - 6e-5 At3g17160 unknown protein O.I. H.G. S.X.
0.46 61.0 0.92 Contig13965_at Contig13965 - - 7e+0 At5g55056 unknown protein O.I. H.G. S.X.
0.24 27.2 0.92 Contig8505_s_at Contig8505 - - 2e+0 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	77.3	0.93	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.
0.60	77.3	0.92	Contig21865_at	Contig21865	-	-	9e-1	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.
0.60	77.3	0.94	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.
0.57	74.9	0.93	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.92	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	O.I.	H.G.	S.X.
0.24	27.2	0.92	Contig8505_s_at	Contig8505	-	-	2e+0	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	90.8	0.90	Contig23185_at	Contig23185	-	-	3e-2	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.
0.60	77.3	0.88	Contig11481_at	Contig11481	-	-	1e+0	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	O.I.	H.G.	S.X.
0.57	74.9	0.84	Contig25355_at	Contig25355	-	-	4e-17	At1g30890	integral membrane HRF1 family protein	O.I.	H.G.	S.X.
0.50	66.9	0.86	Contig24717_at	Contig24717	-	-	4e+0	At4g38570	PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2)	O.I.	H.G.	S.X.
0.50	66.9	0.89	Contig12332_at	Contig12332	-	-	4e+0	At3g50410	OBP1 (OBF BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.50	66.9	0.93	HX07O15r_at	HX07O15r	-	-	4e+0	At5g05470	EIF2 ALPHA	O.I.	H.G.	S.X.
0.44	58.9	0.90	Contig13884_at	Contig13884	-	-	3e-5	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.43	56.4	0.83	Contig14337_at	Contig14337	-	-	4e-8	At5g12870	MYB46 (MYB DOMAIN PROTEIN 46)	O.I.	H.G.	S.X.
0.40	53.1	0.90	Contig14804_s_at	Contig14804	-	-	2e-11	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	O.I.	H.G.	S.X.
0.40	53.1	0.91	Contig26019_at	Contig26019	-	-	3e+0	At2g29650	PHT4	O.I.	H.G.	S.X.
0.38	49.5	0.91	Contig14053_at	Contig14053	-	-	3e-1	At2g45760	BAP2 (BON ASSOCIATION PROTEIN 2)	O.I.	H.G.	S.X.
0.36	47.1	0.83	Contig3303_at	Contig3303	-	-	1e+0	At2g14000	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.87	HT05M20u_at	HT05M20u	-	-	3e-1	At2g28315	-	O.I.	H.G.	S.X.
0.36	47.1	0.89	Contig15468_at	Contig15468	-	-	2e-4	At5g56140	KH domain-containing protein	O.I.	H.G.	S.X.
0.36	47.1	0.89	HB22L02r_at	HB22L02r	-	-	1e+0	At1g44770	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.92	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.
0.33	42.6	0.83	HD12K21r_at	HD12K21r	-	-	1e+1	Atmg01030	-	O.I.	H.G.	S.X.
0.33	42.6	0.88	Contig4797_at	Contig4797	-	-	2e+0	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.
0.33	42.6	0.89	Contig807_s_at	Contig807	-	-	6e-53	At1g55490	CPN60B (CHAPERONIN 60 BETA)	O.I.	H.G.	S.X.
0.30	37.0	0.85	HVSMEa0003M14r2_x_at	HVSMEa0003M14r2	-	-	4e+0	At3g15909	unknown protein	O.I.	H.G.	S.X.
0.30	37.0	0.81	Contig22469_at	Contig22469	-	-	2e+0	At3g49070	unknown protein	O.I.	H.G.	S.X.
0.30	37.0	0.84	Contig4156_s_at	Contig4156	-	-	2e-39	At1g10730	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.
0.29	35.5	0.86	HU05H13u_s_at	HU05H13u	-	-	5e-1	At1g55675	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.91	Contig13768_at	Contig13768	-	-	8e-3	At5g03030	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.27	32.1	0.85	Contig145_at	Contig145	-	-	4e-10	At1g08880	H2AXA	O.I.	H.G.	S.X.
0.27	32.1	0.83	HVSMEg0001I20f_at	HVSMEg0001I20f	-	-	2e-1	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.
0.27	32.1	0.93	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	O.I.	H.G.	S.X.
0.26	30.4	0.90	Contig14105_at	Contig14105	-	-	2e+0	At4g01900	GLB1 (GLNB1 HOMOLOG)	O.I.	H.G.	S.X.
0.25	28.9	0.85	Contig5387_at	Contig5387	-	-	1e-3	At5g02530	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.
0.25	28.9	0.89	Contig7603_at	Contig7603	-	-	4e-21	At2g29390	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.9 99.2 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.4 98.8 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.1 98.4 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
5.3 97.4 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
10.9	99.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig26369_at
Gene name
Homology with Arabidopsis	Similar to At4g02620: vacuolar ATPase subunit F family protein (HF=4e+0)
Module size	6 genes
NF	0.50
%ile	70.1

Co-expression analysis

Gene ID Contig26369_at Gene name Homology with ArabidopsisSimilar to At4g02620: vacuolar ATPase subunit F family protein (HF=4e+0) Module size 6 genes NF 0.50 %ile 70.1

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig26369_at

Gene name
Homology with Arabidopsis Similar to At4g02620: vacuolar ATPase subunit F family protein (HF=4e+0)

Module size 6 genes

NF 0.50

%ile 70.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays