Co-expression analysis

Gene ID	Contig26293_at
Gene name
Homology with Arabidopsis	Similar to At5g37580: - (HF=2e+0)
Module size	6 genes
NF	0.35
%ile	46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.92	Contig26293_at	Contig26293	-	-	2e+0	At5g37580	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.93	Contig25750_at	Contig25750	-	-	4e+0	At5g07880	SNAP29	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.92	HVSMEf0020M03r2_at	HVSMEf0020M03r2	-	-	4e+0	At1g76980	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig19696_at	Contig19696	-	-	2e+0	At4g23410	TET5 (TETRASPANIN5)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig9255_at	Contig9255	-	-	3e+0	At3g47620	AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig25019_at	Contig25019	-	-	9e-2	At3g46910	ubiquitin protein ligase binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	99.0	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.8	97.0	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0	96.0	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.1	94.1	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
2.9	93.4	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.9	93.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.106.1.A1_at, orthologous to the query gene, Contig26293_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	ZmAffx.106.1.A1_at	At5g37580	-	-	3e+0	At4g14060	major latex protein-related / MLP-related	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.19237.1.A1_at	At5g37580	hypothetical protein LOC100216898	-	2e-1	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.18122.1.S1_at	At5g37580	hypothetical protein LOC100278956	-	5e+0	At5g44540	tapetum-specific protein-related	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.45.1.A1_at	At5g37580	glutamine synthetase5	-	2e-51	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.2355.1.A1_at	At5g37580	-	-	9e+0	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.10423.1.S1_at	At5g37580	fatty acid desaturase8	-	6e-14	At5g05580	FAD8 (FATTY ACID DESATURASE 8)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.5277.1.A1_at	At5g37580	-	-	1e+0	At4g39750	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.6439.2.A1_at	At5g37580	eucaryotic initiation factor7	-	7e-14	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.522.1.S1_at	At5g37580	cellulose synthase7	-	1e-38	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.13202.1.A1_at	At5g37580	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.2699.1.A1_at	At5g37580	hypothetical protein LOC100193918	-	1e+1	At5g16170	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.17915.1.A1_at	At5g37580	-	-	7e-103	Atmg00830	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.3707.1.A1_at	At5g37580	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.17620.1.S1_at	At5g37580	-	-	4e+0	At5g59860	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.18338.1.A1_at	At5g37580	hypothetical protein LOC100193344	-	4e+0	At2g27410	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.18474.1.A1_at	At5g37580	hypothetical protein LOC100192651	-	6e+0	At5g61997	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.2713.2.S1_a_at	At5g37580	-	-	1e-30	At5g60790	ATGCN1	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.16630.1.A1_at	At5g37580	-	-	1e+1	At5g60580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.4340.1.A1_at	At5g37580	orange pericarp2	-	2e-29	At4g27070	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.2308.1.A1_at	At5g37580	hypothetical protein LOC100276079	-	2e-2	At5g66005	Expressed protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.2678.1.A1_at	At5g37580	hypothetical protein LOC100193236	-	2e-1	At1g05180	AXR1 (AUXIN RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.19138.1.S1_at	At5g37580	hypothetical protein LOC100277966	-	5e-1	At2g46300	-	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.9194.1.A1_at	At5g37580	-	-	1e+0	At3g03456	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.16824.1.S1_a_at	At5g37580	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.10123.1.S1_at	At5g37580	heat- and acid-stable phosphoprotein	-	3e-14	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.4549.1.A1_at	At5g37580	hypothetical protein LOC100272569	-	1e-6	At5g55530	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.5729.1.A1_at	At5g37580	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.9386.1.A1_at	At5g37580	hypothetical protein LOC100275351	-	2e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.5681.1.A1_at	At5g37580	acylamino-acid-releasing enzyme	-	6e+0	At4g18692	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.3735.1.A1_at	At5g37580	hypothetical protein LOC100277155	-	5e-8	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.5691.1.A1_at	At5g37580	-	-	7e-4	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.2823.1.A1_at	At5g37580	ankyrin protein kinase-like	-	2e+1	At5g40260	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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