CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig26293_at

Gene name
Homology with Arabidopsis Similar to At5g37580: - (HF=2e+0)

Module size 6 genes

NF 0.35

%ile 46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 0.92 Contig26293_at Contig26293 - - 2e+0 At5g37580 - O.I. H.G. S.X.
0.60 77.3 0.93 Contig25750_at Contig25750 - - 4e+0 At5g07880 SNAP29 O.I. H.G. S.X.
0.55 72.0 0.92 HVSMEf0020M03r2_at HVSMEf0020M03r2 - - 4e+0 At1g76980 - O.I. H.G. S.X.
0.50 66.9 0.92 Contig19696_at Contig19696 - - 2e+0 At4g23410 TET5 (TETRASPANIN5) O.I. H.G. S.X.
0.17 16.9 0.93 Contig9255_at Contig9255 - - 3e+0 At3g47620 AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14) O.I. H.G. S.X.
0.13 11.6 0.93 Contig25019_at Contig25019 - - 9e-2 At3g46910 ubiquitin protein ligase binding O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.53	69.7	0.92	Contig26293_at	Contig26293	-	-	2e+0	At5g37580	-	O.I.	H.G.	S.X.
0.60	77.3	0.93	Contig25750_at	Contig25750	-	-	4e+0	At5g07880	SNAP29	O.I.	H.G.	S.X.
0.55	72.0	0.92	HVSMEf0020M03r2_at	HVSMEf0020M03r2	-	-	4e+0	At1g76980	-	O.I.	H.G.	S.X.
0.50	66.9	0.92	Contig19696_at	Contig19696	-	-	2e+0	At4g23410	TET5 (TETRASPANIN5)	O.I.	H.G.	S.X.
0.17	16.9	0.93	Contig9255_at	Contig9255	-	-	3e+0	At3g47620	AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)	O.I.	H.G.	S.X.
0.13	11.6	0.93	Contig25019_at	Contig25019	-	-	9e-2	At3g46910	ubiquitin protein ligase binding	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.5 99.0 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.8 97.0 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2 96.3 GSM311205 28-4_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0 96.0 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8 95.7 GSM398262 HS41-1_0d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6 95.3 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
3.4 94.8 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.1 94.1 GSM68899 8 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
2.9 93.4 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.9 93.4 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
9.5	99.0	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.8	97.0	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0	96.0	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.1	94.1	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
2.9	93.4	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.9	93.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the rice gene, Os09g0444700, orthologous to the query gene, Contig26293_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 Os09g0444700 At5g37580 - Mitochondrial carrier-like protein 2e-1 At2g28920 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.36 44.0 Os04g0560200 At5g37580 - Thioredoxin-related domain containing protein 6e-3 At3g53220 thioredoxin family protein O.I. H.G. S.X.
0.35 41.7 Os12g0497400 At5g37580 - Initiation factor 2B family protein 2e-13 At1g72340 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein O.I. H.G. S.X.
0.33 38.8 Os01g0614700 At5g37580 - Conserved hypothetical protein 5e-20 At3g58600 - O.I. H.G. S.X.
0.31 34.5 Os03g0831800 At5g37580 - WD40-like domain containing protein 5e-5 At2g30050 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.30 32.7 Os05g0392200 At5g37580 - Generic methyltransferase domain containingprotein 1e-7 At3g60910 catalytic/ methyltransferase O.I. H.G. S.X.
0.30 32.7 Os02g0114600 At5g37580 - Cyclin-like F-box domain containing protein 2e-1 At2g39795 mitochondrial glycoprotein family protein / MAM33 family protein O.I. H.G. S.X.
0.29 31.1 Os04g0382700 At5g37580 - Protein prenyltransferase domain containingprotein 6e-28 At2g05170 ATVPS11 O.I. H.G. S.X.
0.29 31.1 Os07g0589400 At5g37580 - Quinonprotein alcohol dehydrogenase-like domaincontaining protein 2e-10 At5g66240 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.29 31.1 Os08g0474600 At5g37580 - Heat shock protein DnaJ, N-terminal domaincontaining protein 1e-2 At2g37090 IRX9 (IRREGULAR XYLEM 9) O.I. H.G. S.X.
0.29 31.1 Os01g0277700 At5g37580 - Conserved hypothetical protein 7e-16 At5g21070 unknown protein O.I. H.G. S.X.
0.27 27.5 Os02g0817000 At5g37580 - Homeodomain-like containing protein 2e+0 At4g08875 - O.I. H.G. S.X.
0.25 24.1 Os09g0307800 At5g37580 - SET domain protein 110 2e-7 At3g59960 ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4) O.I. H.G. S.X.
0.24 22.4 Os05g0540800 At5g37580 - Myb, DNA-binding domain containing protein 3e-4 At2g47210 myb family transcription factor O.I. H.G. S.X.
0.22 19.4 Os06g0523400 At5g37580 - Nucleotide-sugar transporter family protein 9e-7 At5g41760 nucleotide-sugar transporter family protein O.I. H.G. S.X.
0.21 17.9 Os02g0754000 At5g37580 - TLDc domain containing protein 3e+0 At5g46610 unknown protein O.I. H.G. S.X.
0.20 16.5 Os02g0592500 At5g37580 - Conserved hypothetical protein 6e-1 At5g39450 F-box family protein O.I. H.G. S.X.
0.19 15.1 Os06g0487900 At5g37580 - Peptidase C48, SUMO/Sentrin/Ubl1 family protein 4e+0 Atcg00820 - O.I. H.G. S.X.
0.19 15.1 Os02g0152600 At5g37580 - Conserved hypothetical protein 1e-5 At1g53760 unknown protein O.I. H.G. S.X.
0.19 15.1 Os02g0638400 At5g37580 - BRO1 domain containing protein 2e-1 At2g05510 glycine-rich protein O.I. H.G. S.X.
0.18 13.7 Os04g0566000 At5g37580 - - 9e-5 At2g25720 unknown protein O.I. H.G. S.X.
0.18 13.7 Os05g0372100 At5g37580 - Receptor protein kinase-like protein 2e+0 At2g27750 nucleolar matrix protein-related O.I. H.G. S.X.
0.18 13.7 Os02g0462900 At5g37580 - Prefoldin beta-like family protein 9e-2 At2g07340 prefoldin-related KE2 family protein O.I. H.G. S.X.
0.17 12.6 Os09g0363600 At5g37580 - Cytochrome cd1-nitrite reductase-like, C-terminalhaem d1 domain containing protein 5e-5 At2g19430 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.17 12.6 Os03g0737800 At5g37580 - - 2e-21 At4g02030 - O.I. H.G. S.X.
0.13 8.2 Os04g0533000 At5g37580 - ATP-dependent RNA helicase p54 (Xp54) 9e-63 At4g00660 DEAD/DEAH box helicase, putative O.I. H.G. S.X.
0.12 7.2 Os11g0660300 At5g37580 - WD40-like domain containing protein 1e-8 At4g29830 VIP3 (vernalization independence 3) O.I. H.G. S.X.
0.07 3.7 Os05g0579100 At5g37580 - HhH-GPD family protein 1e+0 At1g61470 CCR4-NOT transcription complex protein, putative O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.7	Os09g0444700	At5g37580	-	Mitochondrial carrier-like protein	2e-1	At2g28920	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.36	44.0	Os04g0560200	At5g37580	-	Thioredoxin-related domain containing protein	6e-3	At3g53220	thioredoxin family protein	O.I.	H.G.	S.X.
0.35	41.7	Os12g0497400	At5g37580	-	Initiation factor 2B family protein	2e-13	At1g72340	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.
0.33	38.8	Os01g0614700	At5g37580	-	Conserved hypothetical protein	5e-20	At3g58600	-	O.I.	H.G.	S.X.
0.31	34.5	Os03g0831800	At5g37580	-	WD40-like domain containing protein	5e-5	At2g30050	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.30	32.7	Os05g0392200	At5g37580	-	Generic methyltransferase domain containingprotein	1e-7	At3g60910	catalytic/ methyltransferase	O.I.	H.G.	S.X.
0.30	32.7	Os02g0114600	At5g37580	-	Cyclin-like F-box domain containing protein	2e-1	At2g39795	mitochondrial glycoprotein family protein / MAM33 family protein	O.I.	H.G.	S.X.
0.29	31.1	Os04g0382700	At5g37580	-	Protein prenyltransferase domain containingprotein	6e-28	At2g05170	ATVPS11	O.I.	H.G.	S.X.
0.29	31.1	Os07g0589400	At5g37580	-	Quinonprotein alcohol dehydrogenase-like domaincontaining protein	2e-10	At5g66240	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.29	31.1	Os08g0474600	At5g37580	-	Heat shock protein DnaJ, N-terminal domaincontaining protein	1e-2	At2g37090	IRX9 (IRREGULAR XYLEM 9)	O.I.	H.G.	S.X.
0.29	31.1	Os01g0277700	At5g37580	-	Conserved hypothetical protein	7e-16	At5g21070	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	Os02g0817000	At5g37580	-	Homeodomain-like containing protein	2e+0	At4g08875	-	O.I.	H.G.	S.X.
0.25	24.1	Os09g0307800	At5g37580	-	SET domain protein 110	2e-7	At3g59960	ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4)	O.I.	H.G.	S.X.
0.24	22.4	Os05g0540800	At5g37580	-	Myb, DNA-binding domain containing protein	3e-4	At2g47210	myb family transcription factor	O.I.	H.G.	S.X.
0.22	19.4	Os06g0523400	At5g37580	-	Nucleotide-sugar transporter family protein	9e-7	At5g41760	nucleotide-sugar transporter family protein	O.I.	H.G.	S.X.
0.21	17.9	Os02g0754000	At5g37580	-	TLDc domain containing protein	3e+0	At5g46610	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	Os02g0592500	At5g37580	-	Conserved hypothetical protein	6e-1	At5g39450	F-box family protein	O.I.	H.G.	S.X.
0.19	15.1	Os06g0487900	At5g37580	-	Peptidase C48, SUMO/Sentrin/Ubl1 family protein	4e+0	Atcg00820	-	O.I.	H.G.	S.X.
0.19	15.1	Os02g0152600	At5g37580	-	Conserved hypothetical protein	1e-5	At1g53760	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	Os02g0638400	At5g37580	-	BRO1 domain containing protein	2e-1	At2g05510	glycine-rich protein	O.I.	H.G.	S.X.
0.18	13.7	Os04g0566000	At5g37580	-	-	9e-5	At2g25720	unknown protein	O.I.	H.G.	S.X.
0.18	13.7	Os05g0372100	At5g37580	-	Receptor protein kinase-like protein	2e+0	At2g27750	nucleolar matrix protein-related	O.I.	H.G.	S.X.
0.18	13.7	Os02g0462900	At5g37580	-	Prefoldin beta-like family protein	9e-2	At2g07340	prefoldin-related KE2 family protein	O.I.	H.G.	S.X.
0.17	12.6	Os09g0363600	At5g37580	-	Cytochrome cd1-nitrite reductase-like, C-terminalhaem d1 domain containing protein	5e-5	At2g19430	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.17	12.6	Os03g0737800	At5g37580	-	-	2e-21	At4g02030	-	O.I.	H.G.	S.X.
0.13	8.2	Os04g0533000	At5g37580	-	ATP-dependent RNA helicase p54 (Xp54)	9e-63	At4g00660	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.
0.12	7.2	Os11g0660300	At5g37580	-	WD40-like domain containing protein	1e-8	At4g29830	VIP3 (vernalization independence 3)	O.I.	H.G.	S.X.
0.07	3.7	Os05g0579100	At5g37580	-	HhH-GPD family protein	1e+0	At1g61470	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Contig26293_at
Gene name
Homology with Arabidopsis	Similar to At5g37580: - (HF=2e+0)
Module size	6 genes
NF	0.35
%ile	46.9

Co-expression analysis

Gene ID Contig26293_at Gene name Homology with ArabidopsisSimilar to At5g37580: - (HF=2e+0) Module size 6 genes NF 0.35 %ile 46.9

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig26293_at

Gene name
Homology with Arabidopsis Similar to At5g37580: - (HF=2e+0)

Module size 6 genes

NF 0.35

%ile 46.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays