Co-expression analysis

Gene ID	Contig26293_at
Gene name
Homology with Arabidopsis	Similar to At5g37580: - (HF=2e+0)
Module size	6 genes
NF	0.35
%ile	46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.92	Contig26293_at	Contig26293	-	-	2e+0	At5g37580	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.93	Contig25750_at	Contig25750	-	-	4e+0	At5g07880	SNAP29	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.92	HVSMEf0020M03r2_at	HVSMEf0020M03r2	-	-	4e+0	At1g76980	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig19696_at	Contig19696	-	-	2e+0	At4g23410	TET5 (TETRASPANIN5)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig9255_at	Contig9255	-	-	3e+0	At3g47620	AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig25019_at	Contig25019	-	-	9e-2	At3g46910	ubiquitin protein ligase binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	99.0	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.8	97.0	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0	96.0	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.1	94.1	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
2.9	93.4	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.9	93.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the soybean gene, Gma.17955.1.S1_s_at, orthologous to the query gene, Contig26293_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.9	Gma.17955.1.S1_s_at	At5g37580	-	-	3e-31	At1g72820	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.2808.2.A1_at	At5g37580	-	-	4e+0	At3g10770	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.7073.1.S1_at	At5g37580	-	-	4e+0	At3g47140	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.10222.1.A1_at	At5g37580	-	-	3e+0	At3g48410	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.17598.1.S1_s_at	At5g37580	-	-	9e+0	At5g51090	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.92227.1.S1_at	At5g37580	-	-	7e-1	At4g00950	MEE47 (maternal effect embryo arrest 47)	O.I.	H.G.	S.X.	Please select
0.08	11.0	GmaAffx.31456.1.S1_at	At5g37580	-	-	1e+1	At3g53270	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	Gma.6627.1.S1_s_at	At5g37580	-	-	4e-2	At4g26110	NAP1	O.I.	H.G.	S.X.	Please select
0.06	9.0	Gma.11974.1.S1_s_at	At5g37580	-	-	4e-2	At5g41765	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	GmaAffx.30043.1.S1_at	At5g37580	-	-	1e-4	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.03	5.8	Gma.10919.2.S1_at	At5g37580	-	-	3e-3	At2g36320	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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