CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig26293_at

Gene name
Homology with Arabidopsis Similar to At5g37580: - (HF=2e+0)

Module size 6 genes

NF 0.35

%ile 46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 0.92 Contig26293_at Contig26293 - - 2e+0 At5g37580 - O.I. H.G. S.X.
0.60 77.3 0.93 Contig25750_at Contig25750 - - 4e+0 At5g07880 SNAP29 O.I. H.G. S.X.
0.55 72.0 0.92 HVSMEf0020M03r2_at HVSMEf0020M03r2 - - 4e+0 At1g76980 - O.I. H.G. S.X.
0.50 66.9 0.92 Contig19696_at Contig19696 - - 2e+0 At4g23410 TET5 (TETRASPANIN5) O.I. H.G. S.X.
0.17 16.9 0.93 Contig9255_at Contig9255 - - 3e+0 At3g47620 AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14) O.I. H.G. S.X.
0.13 11.6 0.93 Contig25019_at Contig25019 - - 9e-2 At3g46910 ubiquitin protein ligase binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.5 99.0 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.8 97.0 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2 96.3 GSM311205 28-4_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0 96.0 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8 95.7 GSM398262 HS41-1_0d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6 95.3 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
3.4 94.8 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.1 94.1 GSM68899 8 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
2.9 93.4 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.9 93.4 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g37580, orthologous to the query gene, Contig26293_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.63 78.1 At5g37580 - - - O.I. H.G. S.X.
0.91 95.6 At4g12760 826888 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. H.G. S.X.
0.91 95.6 At5g49000 834959 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVAF O.I. H.G. S.X.
0.83 91.4 At2g38460 818427 ATIREG1 (IRON-REGULATED PROTEIN 1) F:transporter activity;P:iron ion transport;C:integral to membrane;MFPOB O.I. H.G. S.X.
0.80 89.8 At3g21360 821690 electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity;P:biological_process unknown;C:nucleus;BOMPF O.I. H.G. S.X.
0.63 78.1 At5g11690 831041 ATTIM17-3 mitochondrial inner membrane translocase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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