Co-expression analysis

Gene ID	Contig26252_at
Gene name
Homology with Arabidopsis	Similar to At4g19680: IRT2 (HF=1e+0)
Module size	6 genes
NF	0.71
%ile	92.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.89	Contig26252_at	Contig26252	-	-	1e+0	At4g19680	IRT2	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.93	HVSMEc0015H24f_at	HVSMEc0015H24f	-	-	1e-86	Atcg00430	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig10151_s_at	Contig10151	-	-	2e+0	At5g28750	thylakoid assembly protein, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.82	baak1p18_s_at	baak1p18	-	-	7e-1	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.93	AF069331_s_at	AF069331	low temperature induced protein	-	2e+1	At5g17523	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig17176_at	Contig17176	-	-	4e-4	At1g80860	PLMT (PHOSPHOLIPID N-METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.6	99.8	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
18.7	99.7	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
14.5	99.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
8.9	98.9	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.7	98.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.6	95.3	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.5	95.1	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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