Co-expression analysis

Gene ID Contig26236_at
Gene name
Homology with ArabidopsisSimilar to At1g76820: GTP binding / GTPase (HF=1e-6)
Module size 6 genes
NF 0.47
%ile 66.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.89Contig26236_atContig26236--1e-6At1g76820GTP binding / GTPaseO.I.H.G.S.X.
0.6784.70.87Contig4905_s_atContig4905--2e-3At1g47420-O.I.H.G.S.X.
0.5774.90.87Contig20457_atContig20457--5e+0At3g04640glycine-rich proteinO.I.H.G.S.X.
0.5572.00.90Contig11327_atContig11327--3e+1At5g11140-O.I.H.G.S.X.
0.2528.90.89Contig24759_atContig24759--5e+0At5g27780auxin-responsive family proteinO.I.H.G.S.X.
0.2122.60.90Contig6413_atContig6413--2e-7At3g48420haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.198.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.198.0GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.797.7GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
4.897.0GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM6890527 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
3.595.1GSM261033Dicktoo-chilling-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.494.8GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
3.494.8GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.394.6GSM688893 h control replicate 1GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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