Co-expression analysis

Gene ID	Contig26234_at
Gene name
Homology with Arabidopsis	Similar to At2g35360: ubiquitin family protein (HF=1e-3)
Module size	6 genes
NF	0.54
%ile	75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.85	Contig26234_at	Contig26234	-	-	1e-3	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.83	Contig9899_at	Contig9899	-	-	4e-1	At1g65430	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.83	Contig7691_at	Contig7691	pathogen induced protein 2-4	-	4e-2	At2g21620	RD2	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	HS05I21u_s_at	HS05I21u	-	-	4e+0	At3g01322	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.80	Contig2747_at	Contig2747	-	-	3e-19	At1g08450	CRT3 (CALRETICULIN 3)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.82	Contig122_at	Contig122	-	-	9e-27	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.0	99.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.1	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
21.8	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
15.3	99.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.7	98.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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