Co-expression analysis

Gene ID	Contig26171_at
Gene name
Homology with Arabidopsis	Similar to At1g52580: ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5) (HF=2e+0)
Module size	6 genes
NF	0.78
%ile	95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.99	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.98	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.99	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.98	Contig5241_at	Contig5241	-	-	8e-2	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.2	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.8	99.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.5	99.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.5	99.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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