Co-expression analysis

Gene ID	Contig2616_at
Gene name
Homology with Arabidopsis	Similar to At5g11990: proline-rich family protein (HF=2e+0)
Module size	6 genes
NF	0.44
%ile	61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.94	Contig2616_at	Contig2616	-	-	2e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.94	Contig6811_s_at	Contig6811	-	-	5e-1	At1g26470	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig13124_at	Contig13124	-	-	6e-11	At3g56690	CIP111 (CAM INTERACTING PROTEIN 111)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig15349_at	Contig15349	-	-	2e-1	At5g38730	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig5612_s_at	Contig5612	-	-	3e-3	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig7205_at	Contig7205	-	-	2e-2	At2g32550	rcd1-like cell differentiation family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.0	93.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.0	93.8	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.0	93.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage