Co-expression analysis

Gene ID	Contig26133_at
Gene name
Homology with Arabidopsis	Similar to At1g62400: HT1 (high leaf temperature 1) (HF=3e-2)
Module size	6 genes
NF	0.16
%ile	19.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.94	Contig26133_at	Contig26133	-	-	3e-2	At1g62400	HT1 (high leaf temperature 1)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig21093_at	Contig21093	-	-	3e-1	At3g12550	XH/XS domain-containing protein / XS zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig21224_at	Contig21224	-	-	4e-1	At4g17215	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig9660_at	Contig9660	-	-	1e-1	At4g24750	-	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig23075_at	Contig23075	-	-	8e-84	Atcg00900	-	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.95	Contig12834_at	Contig12834	-	-	6e-13	At5g47780	GAUT4 (Galacturonosyltransferase 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.5	91.9	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
2.5	91.9	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
2.4	91.4	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.3	90.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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