Co-expression analysis

Gene ID	Contig25984_at
Gene name
Homology with Arabidopsis	Similar to At4g24380: unknown protein (HF=9e-1)
Module size	6 genes
NF	0.09
%ile	11.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.92	Contig25984_at	Contig25984	-	-	9e-1	At4g24380	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.91	Contig4333_at	Contig4333	-	-	6e-10	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.91	Contig6570_at	Contig6570	-	-	1e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig1954_at	Contig1954	-	-	2e+0	At1g31070	UDP-N-acetylglucosamine pyrophosphorylase-related	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.92	Contig24190_at	Contig24190	-	-	3e-1	At3g59110	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.90	Contig7048_at	Contig7048	-	-	4e-15	At2g30050	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	98.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM373009	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM373005	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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