Co-expression analysis

Gene ID	Contig25849_at
Gene name
Homology with Arabidopsis	Similar to At1g51110: plastid-lipid associated protein PAP / fibrillin family protein (HF=3e-1)
Module size	6 genes
NF	0.04
%ile	5.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.72	Contig25849_at	Contig25849	-	-	3e-1	At1g51110	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.78	HB08I12r_at	HB08I12r	-	-	1e+1	At3g30370	-	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.78	HM02D22r_at	HM02D22r	-	-	2e+1	At5g43070	WPP1 (WPP domain protein 1)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.77	EBro02_SQ007_M05_at	EBro02_SQ007_M05	-	-	4e+0	At5g42470	-	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.77	Contig20608_at	Contig20608	-	-	9e-3	At1g76040	CPK29	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.75	HD12A20r_at	HD12A20r	-	-	1e+0	At2g34050	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.7	98.6	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.3	98.5	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.8	97.8	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.5	97.6	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.2	97.4	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.4	96.6	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.0	96.0	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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