Co-expression analysis

Gene ID Contig25838_at
Gene name
Homology with ArabidopsisSimilar to At3g24180: catalytic/ glucosylceramidase (HF=2e-17)
Module size 6 genes
NF 0.65
%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.96Contig25838_atContig25838--2e-17At3g24180catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.7388.70.96Contig8166_atContig8166--4e-11At5g49940NFU2 (NIFU-LIKE PROTEIN 2)O.I.H.G.S.X.
0.6784.70.97Contig4949_atContig4949--3e-53At5g13000ATGSL12 (glucan synthase-like 12)O.I.H.G.S.X.
0.5066.90.97Contig6981_atContig6981--4e-5At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.4458.90.96Contig5368_atContig5368--2e+0At3g46150unknown proteinO.I.H.G.S.X.
0.4053.10.97HM02P13u_s_atHM02P13u--6e+0At5g47980transferase family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8092.50.92Contig331_x_atContig331--8e-39At1g56070LOS1O.I.H.G.S.X.
0.5572.00.95Contig12632_atContig12632--2e-1At1g69700ATHVA22CO.I.H.G.S.X.
0.5572.00.95Contig13506_atContig13506--1e-1At3g53310transcriptional factor B3 family proteinO.I.H.G.S.X.
0.5066.90.93Contig8763_atContig8763--2e+0At2g33855unknown proteinO.I.H.G.S.X.
0.5066.90.95Contig6469_atContig6469--3e-37At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.5066.90.96Contig16700_atContig16700--3e+0At4g00467-O.I.H.G.S.X.
0.5066.90.96Contig7886_atContig7886--8e+0At5g397905'-AMP-activated protein kinase beta-1 subunit-relatedO.I.H.G.S.X.
0.4458.90.94Contig17102_atContig17102--2e+0At4g30250ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.4458.90.95HB26H03r_s_atHB26H03r--3e+0At5g62470MYB96 (myb domain protein 96)O.I.H.G.S.X.
0.4458.90.96HVSMEf0005G15r2_atHVSMEf0005G15r2--5e+0At5g16567unknown proteinO.I.H.G.S.X.
0.4356.40.93Contig10632_atContig10632--2e-6At5g01040LAC8 (laccase 8)O.I.H.G.S.X.
0.4356.40.93Contig4230_atContig4230--1e-34At3g22200POP2 (POLLEN-PISTIL INCOMPATIBILITY 2)O.I.H.G.S.X.
0.4053.10.93Contig11061_atContig11061--6e-4At2g37020DNA binding / sequence-specific DNA bindingO.I.H.G.S.X.
0.4053.10.94HZ01D23u_s_atHZ01D23u--4e+0At1g05900endonuclease-relatedO.I.H.G.S.X.
0.3849.50.93Contig5669_atContig5669--2e-4At1g77090thylakoid lumenal 29.8 kDa proteinO.I.H.G.S.X.
0.3849.50.95Contig4970_atContig4970--1e-9At5g20950glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.3647.10.95EBpi01_SQ004_K07_s_atEBpi01_SQ004_K07--2e+0At1g50470-O.I.H.G.S.X.
0.3647.10.95Contig5074_atContig5074--4e-1At3g54560HTA11O.I.H.G.S.X.
0.3647.10.96Contig6757_atContig6757--3e-4At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.
0.3545.10.93Contig13906_atContig13906--6e+0At5g48560basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3545.10.95Contig10502_atContig10502--8e-4At4g31140glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.3342.60.94HVSMEm0004B09r2_atHVSMEm0004B09r2--4e+0At5g63220unknown proteinO.I.H.G.S.X.
0.3342.60.95Contig6733_atContig6733--6e-2At3g44720ADT4 (arogenate dehydratase 4)O.I.H.G.S.X.
0.3342.60.95Contig10872_atContig10872--2e+0At4g11911-O.I.H.G.S.X.
0.3342.60.96Contig13081_atContig13081--9e-2At3g25573unknown proteinO.I.H.G.S.X.
0.3240.30.94HVSMEl0010B09r2_atHVSMEl0010B09r2--5e+0At4g18620-O.I.H.G.S.X.
0.3138.60.93Contig8488_atContig8488--9e-6At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.2935.50.93Contig13978_atContig13978--1e-1At1g31660-O.I.H.G.S.X.
0.2935.50.93EBpi01_SQ004_D13_atEBpi01_SQ004_D13--3e+0At2g16720MYB7 (MYB DOMAIN PROTEIN 7)O.I.H.G.S.X.
0.2935.50.94Contig5740_atContig5740--7e-5At3g10490anac052 (Arabidopsis NAC domain containing protein 52)O.I.H.G.S.X.
0.2935.50.94Contig5150_s_atContig5150--2e-1At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.2732.10.94Contig8292_atContig8292--3e-1At1g49290unknown proteinO.I.H.G.S.X.
0.2732.10.93Contig6076_s_atContig6076--1e-2At4g27470zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2732.10.94Contig3956_atContig3956--8e-2At1g17730VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)O.I.H.G.S.X.
0.2732.10.94rbags24e18_atrbags24e18--3e-1At5g35320unknown proteinO.I.H.G.S.X.
0.2732.10.95Contig13114_atContig13114--1e+0At1g14450unknown proteinO.I.H.G.S.X.
0.2732.10.96Contig17036_atContig17036--4e-7At3g27720zinc finger protein-relatedO.I.H.G.S.X.
0.2630.40.90Contig2419_s_atContig2419--3e-7At1g54290eukaryotic translation initiation factor SUI1, putativeO.I.H.G.S.X.
0.2630.40.96Contig6826_s_atContig6826--8e-1At2g15535LCR10 (Low-molecular-weight cysteine-rich 10)O.I.H.G.S.X.
0.2528.90.93Contig6119_atContig6119--4e-1At4g30010unknown proteinO.I.H.G.S.X.
0.2528.90.94Contig4911_atContig4911--7e-1At5g09280pectate lyase family proteinO.I.H.G.S.X.
0.2528.90.94Contig8863_atContig8863--9e-12At1g13380unknown proteinO.I.H.G.S.X.
0.2528.90.96Contig13724_atContig13724--1e-7At5g09770ribosomal protein L17 family proteinO.I.H.G.S.X.
0.2528.90.96Contig6329_atContig6329--3e-31At2g40490HEME2O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.695.3GSM372998genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.093.8GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.093.8GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.993.4GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.993.4GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM372964genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage