Co-expression analysis

Gene ID Contig25838_at
Gene name
Homology with ArabidopsisSimilar to At3g24180: catalytic/ glucosylceramidase (HF=2e-17)
Module size 6 genes
NF 0.65
%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.96Contig25838_atContig25838--2e-17At3g24180catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.7388.70.96Contig8166_atContig8166--4e-11At5g49940NFU2 (NIFU-LIKE PROTEIN 2)O.I.H.G.S.X.
0.6784.70.97Contig4949_atContig4949--3e-53At5g13000ATGSL12 (glucan synthase-like 12)O.I.H.G.S.X.
0.5066.90.97Contig6981_atContig6981--4e-5At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.4458.90.96Contig5368_atContig5368--2e+0At3g46150unknown proteinO.I.H.G.S.X.
0.4053.10.97HM02P13u_s_atHM02P13u--6e+0At5g47980transferase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.695.3GSM372998genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.093.8GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.093.8GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.993.4GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.993.4GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM372964genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.19192.1.A1_at, orthologous to the query gene, Contig25838_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.8Zm.19192.1.A1_atAt3g24180hypothetical protein LOC100279895-1e-14At3g24180catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.147.7Zm.13313.1.S1_atAt3g24180hypothetical protein LOC100274302-1e-1At2g19670PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)O.I.H.G.S.X.
0.115.3Zm.4.1.S1_atAt3g24180ferredoxin3-2e+0At1g10960ATFD1 (FERREDOXIN 1)O.I.H.G.S.X.
0.062.3Zm.18346.1.S1_atAt3g24180--2e+0At5g48250zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.062.3Zm.1998.1.S1_atAt3g24180HGA4-7e-4At3g18170transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.051.9Zm.18189.1.S1_atAt3g24180hypothetical protein LOC100278018-6e+0At1g51402unknown proteinO.I.H.G.S.X.
0.051.9Zm.9344.1.A1_atAt3g24180--6e+0At4g14010RALFL32 (ralf-like 32)O.I.H.G.S.X.
0.031.1Zm.17268.1.S1_atAt3g24180pro-resilin-3e+0At5g01970unknown proteinO.I.H.G.S.X.
0.031.1Zm.13226.2.A1_a_atAt3g2418040S ribosomal protein S9-1e-41At5g3985040S ribosomal protein S9 (RPS9C)O.I.H.G.S.X.
0.031.1Zm.9562.1.S1_atAt3g24180aldehyde oxidase-2-4e-5At5g20960AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)O.I.H.G.S.X.
0.031.1Zm.7463.1.A1_atAt3g24180hypothetical protein LOC100276250-2e+0At1g21090hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.020.7Zm.17719.1.S1_atAt3g24180hypothetical protein LOC100278756-4e+0At4g31930mitochondrial glycoprotein family protein / MAM33 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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