Co-expression analysis

Gene ID	Contig25838_at
Gene name
Homology with Arabidopsis	Similar to At3g24180: catalytic/ glucosylceramidase (HF=2e-17)
Module size	6 genes
NF	0.65
%ile	87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.96	Contig25838_at	Contig25838	-	-	2e-17	At3g24180	catalytic/ glucosylceramidase	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig8166_at	Contig8166	-	-	4e-11	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig4949_at	Contig4949	-	-	3e-53	At5g13000	ATGSL12 (glucan synthase-like 12)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig5368_at	Contig5368	-	-	2e+0	At3g46150	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	HM02P13u_s_at	HM02P13u	-	-	6e+0	At5g47980	transferase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM160744	drought control rep2	GSE6990	Barley drought stress
3.0	93.8	GSM160815	drought control rep3	GSE6990	Barley drought stress
3.0	93.8	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7	92.7	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the wheat gene, Ta.28527.1.S1_at, orthologous to the query gene, Contig25838_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	Ta.28527.1.S1_at	At3g24180	-	-	4e+0	At2g28720	histone H2B, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.285.1.S1_s_at	At3g24180	Pyridoxal kinase	-	4e-12	At5g37850	SOS4 (SALT OVERLY SENSITIVE 4)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.9677.1.S1_x_at	At3g24180	-	-	3e+1	At5g26692	-	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.29641.1.A1_s_at	At3g24180	-	-	6e+0	At4g11970	YT521-B-like family protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	TaAffx.71229.1.A1_at	At3g24180	-	-	7e+0	At4g10595	LCR2 (Low-molecular-weight cysteine-rich 2)	O.I.	H.G.	S.X.	Please select
0.08	9.4	TaAffx.9568.1.S1_at	At3g24180	-	-	4e-1	At4g03205	coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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