CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig25838_at

Gene name
Homology with Arabidopsis Similar to At3g24180: catalytic/ glucosylceramidase (HF=2e-17)

Module size 6 genes

NF 0.65

%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.7 0.96 Contig25838_at Contig25838 - - 2e-17 At3g24180 catalytic/ glucosylceramidase O.I. H.G. S.X.
0.73 88.7 0.96 Contig8166_at Contig8166 - - 4e-11 At5g49940 NFU2 (NIFU-LIKE PROTEIN 2) O.I. H.G. S.X.
0.67 84.7 0.97 Contig4949_at Contig4949 - - 3e-53 At5g13000 ATGSL12 (glucan synthase-like 12) O.I. H.G. S.X.
0.50 66.9 0.97 Contig6981_at Contig6981 - - 4e-5 At4g00170 vesicle-associated membrane family protein / VAMP family protein O.I. H.G. S.X.
0.44 58.9 0.96 Contig5368_at Contig5368 - - 2e+0 At3g46150 unknown protein O.I. H.G. S.X.
0.40 53.1 0.97 HM02P13u_s_at HM02P13u - - 6e+0 At5g47980 transferase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 97.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM372998 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5 95.1 GSM160744 drought control rep2 GSE6990 Barley drought stress
3.0 93.8 GSM160815 drought control rep3 GSE6990 Barley drought stress
3.0 93.8 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9 93.4 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9 93.4 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7 92.7 GSM372964 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.48188.1.A1_at, orthologous to the query gene, Contig25838_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.30 52.0 PtpAffx.48188.1.A1_at At3g24180 - - 3e+0 At1g48770 unknown protein O.I. H.G. S.X.
0.22 38.3 PtpAffx.109204.1.S1_at At3g24180 - - 3e+0 At3g57840 self-incompatibility protein-related O.I. H.G. S.X.
0.07 11.6 PtpAffx.219050.1.S1_at At3g24180 hypothetical protein - 3e-1 At4g14320 60S ribosomal protein L36a/L44 (RPL36aB) O.I. H.G. S.X.
0.02 3.6 PtpAffx.210172.1.S1_at At3g24180 hypothetical protein - 2e-6 At5g56000 heat shock protein 81-4 (HSP81-4) O.I. H.G. S.X.
0.02 3.6 PtpAffx.215076.1.S1_at At3g24180 - - 3e+0 At5g65495 unknown protein O.I. H.G. S.X.
0.01 2.2 PtpAffx.206018.1.S1_at At3g24180 hypothetical protein - 5e+0 At2g23970 defense-related protein, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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