Co-expression analysis

Gene ID Contig25838_at
Gene name
Homology with ArabidopsisSimilar to At3g24180: catalytic/ glucosylceramidase (HF=2e-17)
Module size 6 genes
NF 0.65
%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.96Contig25838_atContig25838--2e-17At3g24180catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.7388.70.96Contig8166_atContig8166--4e-11At5g49940NFU2 (NIFU-LIKE PROTEIN 2)O.I.H.G.S.X.
0.6784.70.97Contig4949_atContig4949--3e-53At5g13000ATGSL12 (glucan synthase-like 12)O.I.H.G.S.X.
0.5066.90.97Contig6981_atContig6981--4e-5At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.4458.90.96Contig5368_atContig5368--2e+0At3g46150unknown proteinO.I.H.G.S.X.
0.4053.10.97HM02P13u_s_atHM02P13u--6e+0At5g47980transferase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.695.3GSM372998genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.093.8GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.093.8GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.993.4GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.993.4GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM372964genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.1095.1.S1_at, orthologous to the query gene, Contig25838_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8693.0Gma.1095.1.S1_atAt3g24180--2e-22At3g24180catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.5778.8Gma.9846.2.S1_s_atAt3g24180--6e-2At2g35330protein binding / zinc ion bindingO.I.H.G.S.X.
0.4360.6GmaAffx.76231.1.S1_atAt3g24180--4e-7At4g25880APUM6 (Arabidopsis Pumilio 6)O.I.H.G.S.X.
0.4259.3Gma.7375.1.S1_atAt3g24180--2e+0At4g27740-O.I.H.G.S.X.
0.4158.1Gma.10642.1.S1_atAt3g24180--4e-48At5g45550mob1/phocein family proteinO.I.H.G.S.X.
0.4057.1GmaAffx.8927.1.S1_atAt3g24180--5e-32At4g39100SHL1 (short life)O.I.H.G.S.X.
0.3751.7Gma.6751.2.S1_atAt3g24180--2e+0At4g18372small nuclear ribonucleoprotein-related / snRNP-relatedO.I.H.G.S.X.
0.3650.8Gma.8366.1.S1_a_atAt3g24180--2e-12At3g17850protein kinase, putativeO.I.H.G.S.X.
0.3548.6Gma.10823.1.S1_atAt3g24180--3e-32At1g65220eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinO.I.H.G.S.X.
0.3447.2GmaAffx.44003.1.S1_atAt3g24180--1e+0At5g22280unknown proteinO.I.H.G.S.X.
0.3142.2Gma.1066.1.S1_atAt3g24180--4e-67At3g13670protein kinase family proteinO.I.H.G.S.X.
0.3040.4Gma.2787.1.S1_s_atAt3g24180--6e-17At1g10290ADL6 (DYNAMIN-LIKE PROTEIN 6)O.I.H.G.S.X.
0.3040.4Gma.2668.2.A1_atAt3g24180--4e-6At5g42520ATBPC6O.I.H.G.S.X.
0.3040.4Gma.16756.1.S1_x_atAt3g24180--4e-66At3g52560UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)O.I.H.G.S.X.
0.2939.0GmaAffx.72999.1.S1_atAt3g24180--1e-12At4g39170SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeO.I.H.G.S.X.
0.2939.0Gma.4225.1.S1_a_atAt3g24180--6e-13At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.2839.0GmaAffx.92542.1.S1_s_atAt3g24180--1e-43At5g45550mob1/phocein family proteinO.I.H.G.S.X.
0.2735.7Gma.2314.1.S1_atAt3g24180--1e-33At4g24740AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)O.I.H.G.S.X.
0.2735.7Gma.1782.2.S1_a_atAt3g24180--5e-7At5g15400U-box domain-containing proteinO.I.H.G.S.X.
0.2735.7GmaAffx.34127.1.S1_atAt3g24180--3e+0At5g49525unknown proteinO.I.H.G.S.X.
0.2633.9Gma.5027.1.A1_s_atAt3g24180--1e+0At2g36080DNA-binding protein, putativeO.I.H.G.S.X.
0.2430.9Gma.938.1.S1_atAt3g24180--6e-10At4g03020transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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