CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig25838_at

Gene name
Homology with Arabidopsis Similar to At3g24180: catalytic/ glucosylceramidase (HF=2e-17)

Module size 6 genes

NF 0.65

%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.7 0.96 Contig25838_at Contig25838 - - 2e-17 At3g24180 catalytic/ glucosylceramidase O.I. H.G. S.X.
0.73 88.7 0.96 Contig8166_at Contig8166 - - 4e-11 At5g49940 NFU2 (NIFU-LIKE PROTEIN 2) O.I. H.G. S.X.
0.67 84.7 0.97 Contig4949_at Contig4949 - - 3e-53 At5g13000 ATGSL12 (glucan synthase-like 12) O.I. H.G. S.X.
0.50 66.9 0.97 Contig6981_at Contig6981 - - 4e-5 At4g00170 vesicle-associated membrane family protein / VAMP family protein O.I. H.G. S.X.
0.44 58.9 0.96 Contig5368_at Contig5368 - - 2e+0 At3g46150 unknown protein O.I. H.G. S.X.
0.40 53.1 0.97 HM02P13u_s_at HM02P13u - - 6e+0 At5g47980 transferase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 97.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM372998 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5 95.1 GSM160744 drought control rep2 GSE6990 Barley drought stress
3.0 93.8 GSM160815 drought control rep3 GSE6990 Barley drought stress
3.0 93.8 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9 93.4 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9 93.4 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7 92.7 GSM372964 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g24180, orthologous to the query gene, Contig25838_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.51 66.3 At3g24180 822004 catalytic/ glucosylceramidase F:glucosylceramidase activity, catalytic activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:plasma membrane;BMPOAF O.I. H.G. S.X.
0.83 91.4 At3g13340 820534 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;BMFOPA O.I. H.G. S.X.
0.81 90.4 At1g56560 842110 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB O.I. H.G. S.X.
0.78 88.6 At4g16100 827296 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.77 88.0 At1g04830 839404 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPB O.I. H.G. S.X.
0.71 84.2 At2g01600 814689 epsin N-terminal homology (ENTH) domain-containing protein F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:N-terminal protein myristoylation, clathrin coat assembly;C:membrane;MPFOB O.I. H.G. S.X.
0.68 82.2 At1g04790 839412 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. H.G. S.X.
0.68 82.2 At1g13450 837905 DNA binding protein GT-1 F:transcription factor activity;P:regulation of transcription;C:nucleus;PMFOB O.I. H.G. S.X.
0.67 81.6 At3g21290 821683 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMOFPVA O.I. H.G. S.X.
0.67 81.6 At4g33210 829457 F-box family protein (FBL15) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV O.I. H.G. S.X.
0.63 78.1 At5g53440 835425 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA O.I. H.G. S.X.
0.63 78.1 At3g10030 820164 aspartate/glutamate/uridylate kinase family protein F:DNA binding;P:amino acid biosynthetic process;C:cytoplasm;BOPAMF O.I. H.G. S.X.
0.61 76.7 At3g20800 821628 rcd1-like cell differentiation protein, putative F:molecular_function unknown;P:multicellular organismal development;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.60 75.7 At3g59380 825107 FTA (FARNESYLTRANSFERASE A) Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1. O.I. H.G. S.X.
0.59 74.7 At1g09060 837427 transcription factor jumonji (jmjC) domain-containing protein F:protein binding, transcription factor activity, zinc ion binding;P:unknown;C:unknown;PMOF O.I. H.G. S.X.
0.59 74.7 At4g29790 829101 unknown protein F:molecular_function unknown;P:unknown;C:unknown;OMPFBV O.I. H.G. S.X.
0.58 73.8 At2g39760 818561 BPM3 F:protein binding;P:biological_process unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.58 73.8 At3g01200 821293 AtRP2 (PPDK regulatory protein 2) Encodes a PPDK regulatory protein that has protein kinase activity but lacks protein phosphatase activity towards PPDK (pyruvate orthophosphate dikinase). O.I. H.G. S.X.
0.50 65.3 At1g71800 843510 cleavage stimulation factor, putative F:protein binding, RNA binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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