Co-expression analysis

Gene ID Contig25838_at
Gene name
Homology with ArabidopsisSimilar to At3g24180: catalytic/ glucosylceramidase (HF=2e-17)
Module size 6 genes
NF 0.65
%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.96Contig25838_atContig25838--2e-17At3g24180catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.7388.70.96Contig8166_atContig8166--4e-11At5g49940NFU2 (NIFU-LIKE PROTEIN 2)O.I.H.G.S.X.
0.6784.70.97Contig4949_atContig4949--3e-53At5g13000ATGSL12 (glucan synthase-like 12)O.I.H.G.S.X.
0.5066.90.97Contig6981_atContig6981--4e-5At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.4458.90.96Contig5368_atContig5368--2e+0At3g46150unknown proteinO.I.H.G.S.X.
0.4053.10.97HM02P13u_s_atHM02P13u--6e+0At5g47980transferase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.695.3GSM372998genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.093.8GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.093.8GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.993.4GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.993.4GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM372964genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g24180, orthologous to the query gene, Contig25838_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5166.3At3g24180822004catalytic/ glucosylceramidaseF:glucosylceramidase activity, catalytic activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:plasma membrane;BMPOAFO.I.H.G.S.X.
0.8391.4At3g13340820534WD-40 repeat family proteinF:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;BMFOPAO.I.H.G.S.X.
0.8190.4At1g56560842110beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeF:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPBO.I.H.G.S.X.
0.7888.6At4g16100827296unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.7788.0At1g04830839404RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPBO.I.H.G.S.X.
0.7184.2At2g01600814689epsin N-terminal homology (ENTH) domain-containing proteinF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:N-terminal protein myristoylation, clathrin coat assembly;C:membrane;MPFOBO.I.H.G.S.X.
0.6882.2At1g04790839412zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.H.G.S.X.
0.6882.2At1g13450837905DNA binding protein GT-1F:transcription factor activity;P:regulation of transcription;C:nucleus;PMFOBO.I.H.G.S.X.
0.6781.6At3g21290821683dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMOFPVAO.I.H.G.S.X.
0.6781.6At4g33210829457F-box family protein (FBL15)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBVO.I.H.G.S.X.
0.6378.1At5g53440835425unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.H.G.S.X.
0.6378.1At3g10030820164aspartate/glutamate/uridylate kinase family proteinF:DNA binding;P:amino acid biosynthetic process;C:cytoplasm;BOPAMFO.I.H.G.S.X.
0.6176.7At3g20800821628rcd1-like cell differentiation protein, putativeF:molecular_function unknown;P:multicellular organismal development;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.6075.7At3g59380825107FTA (FARNESYLTRANSFERASE A)Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.O.I.H.G.S.X.
0.5974.7At1g09060837427transcription factor jumonji (jmjC) domain-containing proteinF:protein binding, transcription factor activity, zinc ion binding;P:unknown;C:unknown;PMOFO.I.H.G.S.X.
0.5974.7At4g29790829101unknown proteinF:molecular_function unknown;P:unknown;C:unknown;OMPFBVO.I.H.G.S.X.
0.5873.8At2g39760818561BPM3F:protein binding;P:biological_process unknown;C:unknown;MPOFVO.I.H.G.S.X.
0.5873.8At3g01200821293AtRP2 (PPDK regulatory protein 2)Encodes a PPDK regulatory protein that has protein kinase activity but lacks protein phosphatase activity towards PPDK (pyruvate orthophosphate dikinase).O.I.H.G.S.X.
0.5065.3At1g71800843510cleavage stimulation factor, putativeF:protein binding, RNA binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage