Co-expression analysis

Gene ID Contig25706_at
Gene name
Homology with ArabidopsisSimilar to At2g37000: TCP family transcription factor, putative (HF=3e-1)
Module size 6 genes
NF 0.74
%ile 94.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.98Contig25706_atContig25706--3e-1At2g37000TCP family transcription factor, putativeO.I.H.G.S.X.
0.9198.10.98Contig7079_atContig7079--3e-3At2g18980peroxidase, putativeO.I.H.G.S.X.
0.6784.70.99Contig18000_atContig18000knotted 1-1e-33At1g62360STM (SHOOT MERISTEMLESS)O.I.H.G.S.X.
0.6178.70.98Contig2160_atContig2160--2e-34At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)O.I.H.G.S.X.
0.5369.70.98Contig3147_atContig3147--3e-4At1g09940HEMA2O.I.H.G.S.X.
0.4458.90.98Contig18164_atContig18164--1e-11At1g20920DEAD box RNA helicase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.999.5GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
13.999.5GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
13.299.4GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.399.3GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
10.999.2GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
10.999.2GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.099.1GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.399.0GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
9.399.0GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
8.498.8GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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