Co-expression analysis

Gene ID Contig25651_at
Gene name
Homology with ArabidopsisSimilar to At2g41225: unknown protein (HF=5e-1)
Module size 6 genes
NF 0.51
%ile 70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig25651_atContig25651--5e-1At2g41225unknown proteinO.I.H.G.S.X.
0.7187.10.96Contig25401_atContig25401--4e-3At1g78710unknown proteinO.I.H.G.S.X.
0.4661.00.97Contig13168_atContig13168--3e+0At5g50130short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4356.40.96Contig13036_atContig13036--6e-1At3g57000nucleolar essential protein-relatedO.I.H.G.S.X.
0.3037.00.96Contig6491_atContig6491--6e-1At5g02230haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.2935.50.96Contig18328_atContig18328--5e-1Atmg00110-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5066.90.94Contig16070_atContig16070--9e+0At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.5066.90.95Contig10955_atContig10955--5e-32At3g17750protein kinase family proteinO.I.H.G.S.X.
0.5066.90.96Contig21861_atContig21861--9e-2At1g23530unknown proteinO.I.H.G.S.X.
0.4661.00.93Contig18310_atContig18310--1e+0At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.4661.00.96HV_CEa0014A19r2_atHV_CEa0014A19r2--3e+0At1g58160jacalin lectin family proteinO.I.H.G.S.X.
0.4458.90.95Contig12673_atContig12673--1e-5At4g15470-O.I.H.G.S.X.
0.4458.90.96Contig13436_atContig13436--3e-1At3g23200unknown proteinO.I.H.G.S.X.
0.4458.90.95Contig9733_s_atContig9733--4e-1At5g27860unknown proteinO.I.H.G.S.X.
0.4356.40.94Contig20951_atContig20951--5e+0At5g52605-O.I.H.G.S.X.
0.4356.40.95Contig6902_atContig6902--3e-1At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.4053.10.94Contig136_s_atContig136--2e-98At4g40040histone H3.2O.I.H.G.S.X.
0.4053.10.96Contig12656_s_atContig12656--8e+0At5g45830DOG1 (DELAY OF GERMINATION 1)O.I.H.G.S.X.
0.4053.10.96Contig9797_atContig9797--1e-2At1g23010LPR1 (Low Phosphate Root1)O.I.H.G.S.X.
0.4053.10.97Contig23171_atContig23171--2e+0At1g11570nuclear transport factor 2 (NTF2), putativeO.I.H.G.S.X.
0.3950.50.95HV_CEb0017F03r2_s_atHV_CEb0017F03r2light-harvesting complex I-2e-11At3g54890LHCA1O.I.H.G.S.X.
0.3950.50.95Contig4878_atContig4878--8e-19At1g47260GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.3849.50.96Contig20549_atContig20549--2e-27At2g39480PGP6 (P-GLYCOPROTEIN 6)O.I.H.G.S.X.
0.3849.50.92Contig14958_atContig14958--7e-1At1g48960universal stress protein (USP) family proteinO.I.H.G.S.X.
0.3647.10.92HVSMEi0013L12r2_s_atHVSMEi0013L12r2--1e+1At5g06590unknown proteinO.I.H.G.S.X.
0.3647.10.94Contig14856_atContig14856--3e+0At4g39430-O.I.H.G.S.X.
0.3647.10.95EBem10_SQ002_A13_atEBem10_SQ002_A13--8e+0At3g25580thioredoxin-relatedO.I.H.G.S.X.
0.3647.10.95Contig24322_atContig24322--5e+0At2g04425LCR82 (Low-molecular-weight cysteine-rich 82)O.I.H.G.S.X.
0.3647.10.96Contig2110_atContig2110--1e-2At2g39900LIM domain-containing proteinO.I.H.G.S.X.
0.3647.10.96Contig15411_atContig15411--2e-4At5g49890CLC-C (CHLORIDE CHANNEL C)O.I.H.G.S.X.
0.3545.10.94Contig8658_atContig8658--1e-1At5g46890protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3342.60.93Contig6221_atContig6221--2e+0At1g80245-O.I.H.G.S.X.
0.3342.60.93Contig23998_atContig23998--4e+0At3g21150zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.3342.60.94Contig8132_atContig8132--4e-8At5g59780MYB59 (MYB DOMAIN PROTEIN 59)O.I.H.G.S.X.
0.3342.60.95Contig9517_atContig9517--2e-45At5g40200DegP9 (DegP protease 9)O.I.H.G.S.X.
0.3342.60.95Contig13156_atContig13156--3e-6At1g77122unknown proteinO.I.H.G.S.X.
0.3342.60.95Contig15509_atContig15509--2e-3At1g10522unknown proteinO.I.H.G.S.X.
0.3342.60.95Contig10724_atContig10724--1e-10At3g48890ATMP2O.I.H.G.S.X.
0.3342.60.96Contig16787_atContig16787--2e+0At3g11320organic anion transmembrane transporterO.I.H.G.S.X.
0.3342.60.96Contig8925_atContig8925--3e+0At5g66060iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.3240.30.93HVSMEn0016L21r2_s_atHVSMEn0016L21r2--4e+0At3g61220short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.3138.60.92Contig10084_atContig10084--5e-2At5g66460(1-4)-beta-mannan endohydrolase, putativeO.I.H.G.S.X.
0.3138.60.93Contig14979_s_atContig14979--2e-2At4g30460glycine-rich proteinO.I.H.G.S.X.
0.3138.60.96Contig10956_atContig10956--4e-1At2g16800high-affinity nickel-transport family proteinO.I.H.G.S.X.
0.3138.60.96Contig11789_atContig11789--2e+0At3g04620nucleic acid bindingO.I.H.G.S.X.
0.3037.00.94Contig7793_atContig7793--2e-2At4g24590unknown proteinO.I.H.G.S.X.
0.3037.00.95Contig17354_atContig17354--4e+0At2g39020GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.2935.50.93HVSMEg0013M03r2_atHVSMEg0013M03r2--2e+1At5g47920unknown proteinO.I.H.G.S.X.
0.2935.50.92Contig9737_s_atContig9737--8e-9At3g51250senescence/dehydration-associated protein-relatedO.I.H.G.S.X.
0.2935.50.93Contig7290_atContig7290--5e-2At5g42440protein kinase family proteinO.I.H.G.S.X.
0.2935.50.94Contig3970_atContig3970--2e-3At3g55460SCL30O.I.H.G.S.X.
0.2935.50.94Contig10992_atContig10992--7e-1At1g16250kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.2935.50.95Contig9351_s_atContig9351--1e+0At5g42070unknown proteinO.I.H.G.S.X.
0.2935.50.95Contig14279_atContig14279--6e+0At1g77290tetrachloro-p-hydroquinone reductive dehalogenase-relatedO.I.H.G.S.X.
0.2835.50.94Contig18991_atContig18991--4e+0At5g18748unknown proteinO.I.H.G.S.X.
0.2732.10.95rbah11g06_s_atrbah11g06--1e+0At3g21860ASK10 (ARABIDOPSIS SKP1-LIKE 10)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.899.9GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
27.999.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.498.5GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.198.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM160464drought control rep1GSE6990Barley drought stressLink to GEO
5.197.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM161220cold treatment rep2GSE6993Barley low temperature stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage