Co-expression analysis

Gene ID	Contig25651_at
Gene name
Homology with Arabidopsis	Similar to At2g41225: unknown protein (HF=5e-1)
Module size	6 genes
NF	0.51
%ile	70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig25651_at	Contig25651	-	-	5e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig25401_at	Contig25401	-	-	4e-3	At1g78710	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig13036_at	Contig13036	-	-	6e-1	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig18328_at	Contig18328	-	-	5e-1	Atmg00110	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
39.8	99.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
27.9	99.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM160464	drought control rep1	GSE6990	Barley drought stress
5.1	97.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.84357.1.A1_at, orthologous to the query gene, Contig25651_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	97.7	PtpAffx.84357.1.A1_at	At2g41225	hypothetical protein	-	5e-12	At4g22930	PYR4 (PYRIMIDIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.68	91.3	Ptp.1068.1.S1_at	At2g41225	-	-	1e-13	At5g03080	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.4119.1.S1_at	At2g41225	hypothetical protein	-	1e-9	At4g00740	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.150944.1.S1_at	At2g41225	-	-	5e-9	At3g19260	LOH2 (LAG ONE HOMOLOGUE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.551.1.S1_at	At2g41225	hypothetical protein	-	3e-33	At1g07510	ftsh10 (FtsH protease 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.939.3.A1_at	At2g41225	-	-	3e+0	Atcg00905	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	PtpAffx.39317.1.S1_at	At2g41225	hypothetical protein	-	9e-11	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.8037.1.S1_at	At2g41225	-	-	3e+0	At1g66380	MYB114 (myb domain protein 114)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.3309.1.S1_at	At2g41225	hypothetical protein	-	1e-20	At2g07050	CAS1 (cycloartenol synthase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.5012.1.S1_at	At2g41225	-	-	3e-14	At4g36660	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.7177.1.S1_at	At2g41225	hypothetical protein	-	2e-18	At3g17430	phosphate translocator-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.7874.1.S1_at	At2g41225	-	-	2e+0	At1g60370	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.3163.1.A1_at	At2g41225	hypothetical protein	-	4e-1	At1g58420	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.7659.1.S1_at	At2g41225	hypothetical protein	-	2e-12	At3g15410	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.4551.1.S1_at	At2g41225	condensin complex components subunit	-	7e-1	At5g62165	AGL42 (AGAMOUS LIKE 42)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.338.1.A1_at	At2g41225	hypothetical protein	-	3e-20	At5g32450	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	Ptp.6461.1.A1_at	At2g41225	hypothetical protein	-	3e-50	At1g47830	clathrin coat assembly protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.80166.1.S1_at	At2g41225	hypothetical protein	-	7e-10	At1g26300	BSD domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	Ptp.1714.1.A1_a_at	At2g41225	hypothetical protein	-	2e+0	At4g03505	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.10823.1.S1_s_at	At2g41225	cc-nbs-lrr resistance protein	-	2e+1	At5g21920	YGGT family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.1153.2.S1_at	At2g41225	-	-	4e-1	At1g13870	DRL1 (DEFORMED ROOTS AND LEAVES 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.751.1.S1_at	At2g41225	hypothetical protein	-	2e-27	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.3156.1.S1_s_at	At2g41225	-	-	8e+0	At3g60550	CYCP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.6678.1.S1_at	At2g41225	hypothetical protein	-	2e+0	At1g34910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.52331.1.A1_at	At2g41225	hypothetical protein	-	5e+0	At3g25014	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.40255.1.S1_at	At2g41225	-	-	1e+0	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	Ptp.2938.1.S1_at	At2g41225	hypothetical protein	-	2e-30	At1g44820	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.26817.1.S1_at	At2g41225	hypothetical protein	-	3e-8	At2g25680	MOT1 (molybdate transporter 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	Ptp.954.1.S1_at	At2g41225	hypothetical protein	-	6e-19	At2g21230	bZIP family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.7780.1.S1_at	At2g41225	hypothetical protein	-	8e-28	At5g06060	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.2272.1.A1_at	At2g41225	-	-	4e-7	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.4507.1.A1_at	At2g41225	hypothetical protein	-	5e-1	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.45729.2.S1_at	At2g41225	-	-	8e-1	At4g31800	WRKY18	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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