CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig25651_at

Gene name
Homology with Arabidopsis Similar to At2g41225: unknown protein (HF=5e-1)

Module size 6 genes

NF 0.51

%ile 70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig25651_at Contig25651 - - 5e-1 At2g41225 unknown protein O.I. H.G. S.X.
0.71 87.1 0.96 Contig25401_at Contig25401 - - 4e-3 At1g78710 unknown protein O.I. H.G. S.X.
0.46 61.0 0.97 Contig13168_at Contig13168 - - 3e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.43 56.4 0.96 Contig13036_at Contig13036 - - 6e-1 At3g57000 nucleolar essential protein-related O.I. H.G. S.X.
0.30 37.0 0.96 Contig6491_at Contig6491 - - 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.29 35.5 0.96 Contig18328_at Contig18328 - - 5e-1 Atmg00110 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.8 99.9 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
27.9 99.8 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.4 98.5 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.1 98.4 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM160464 drought control rep1 GSE6990 Barley drought stress
5.1 97.3 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.7 96.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM161220 cold treatment rep2 GSE6993 Barley low temperature stress

Inter-species module comparison

A co-expression module including the rice gene, Os02g0222100, orthologous to the query gene, Contig25651_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.35 41.7 Os02g0222100 At2g41225 - Cysteine synthase (EC 4.2.99.8) 1e+0 At3g04940 CYSD1 (CYSTEINE SYNTHASE D1) O.I. H.G. S.X.
0.50 68.0 Os07g0493800 At2g41225 - Protein kinase domain containing protein 3e-4 At4g13190 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase O.I. H.G. S.X.
0.44 58.1 Os01g0816600 At2g41225 - Protein kinase domain containing protein 3e-7 At5g49780 ATP binding / kinase/ protein serine/threonine kinase O.I. H.G. S.X.
0.25 24.1 Os01g0810500 At2g41225 - Protein kinase domain containing protein 2e-5 At1g61860 protein kinase, putative O.I. H.G. S.X.
0.08 4.2 Os02g0515200 At2g41225 - Conserved hypothetical protein 6e-1 At3g46130 MYB111 (MYB DOMAIN PROTEIN 111) O.I. H.G. S.X.
0.06 3.0 Os05g0186900 At2g41225 - Conserved hypothetical protein 7e-1 At1g04250 AXR3 (AUXIN RESISTANT 3) O.I. H.G. S.X.
0.01 0.5 Os07g0570500 At2g41225 - Peptidase M16, C-terminal domain containingprotein 7e-10 Atcg00280 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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