Co-expression analysis

Gene ID	Contig25651_at
Gene name
Homology with Arabidopsis	Similar to At2g41225: unknown protein (HF=5e-1)
Module size	6 genes
NF	0.51
%ile	70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig25651_at	Contig25651	-	-	5e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig25401_at	Contig25401	-	-	4e-3	At1g78710	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig13036_at	Contig13036	-	-	6e-1	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig18328_at	Contig18328	-	-	5e-1	Atmg00110	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
39.8	99.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
27.9	99.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM160464	drought control rep1	GSE6990	Barley drought stress
5.1	97.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.7805.1.S1_at, orthologous to the query gene, Contig25651_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	GmaAffx.7805.1.S1_at	At2g41225	-	-	9e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.13013.2.S1_a_at	At2g41225	-	-	5e+0	At5g26617	-	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.13162.1.S1_at	At2g41225	-	-	5e-5	At1g53230	TCP3	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.10990.3.S1_at	At2g41225	-	-	7e-11	At1g53800	endonuclease	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.3722.1.S1_at	At2g41225	-	-	2e-87	At2g01320	ABC transporter family protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.13029.1.A1_at	At2g41225	-	-	6e-10	At1g04580	AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.15220.1.S1_s_at	At2g41225	Ubiquitin-conjugation enzyme gene	-	4e-12	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.14	17.5	GmaAffx.45873.2.S1_at	At2g41225	-	-	1e-6	At3g17940	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.14475.1.S1_at	At2g41225	-	-	2e-15	At2g46915	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	Gma.1330.2.S1_at	At2g41225	-	-	1e+0	At3g11530	vacuolar protein sorting 55 family protein / VPS55 family protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.7270.1.S1_at	At2g41225	-	-	4e-55	At3g29320	glucan phosphorylase, putative	O.I.	H.G.	S.X.	Please select
0.08	11.0	Gma.1923.1.S1_at	At2g41225	-	-	4e-11	At3g06980	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.07	10.2	GmaAffx.39148.1.S1_at	At2g41225	-	-	4e-7	At5g12900	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	9.0	Gma.4224.1.S1_at	At2g41225	-	-	3e-17	At1g32550	ferredoxin family protein	O.I.	H.G.	S.X.	Please select
0.05	8.0	Gma.6470.1.S1_at	At2g41225	-	-	4e-1	At1g33230	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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