Co-expression analysis

Gene ID	Contig25541_at
Gene name
Homology with Arabidopsis	Similar to At3g61210: embryo-abundant protein-related (HF=1e+0)
Module size	6 genes
NF	0.04
%ile	5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.87	Contig25541_at	Contig25541	-	-	1e+0	At3g61210	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig15956_at	Contig15956	-	-	7e-1	At4g00130	-	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.93	Contig10118_at	Contig10118	-	-	1e-1	At1g53620	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.95	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.94	Contig19576_x_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.94	Contig7061_s_at	Contig7061	-	-	3e-1	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.2	99.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
18.7	99.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.6	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.8	99.6	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
11.1	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.7	99.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.6	97.7	GSM71155	Morex stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.7	96.9	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the maize gene, Zm.18069.1.S1_at, orthologous to the query gene, Contig25541_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	97.0	Zm.18069.1.S1_at	At3g61210	-	-	1e-18	At5g60620	phospholipid/glycerol acyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	Zm.1807.1.A1_at	At3g61210	hypothetical protein LOC100279285	-	8e+0	Atcg00440	-	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.15359.1.S1_at	At3g61210	-	-	2e+0	At2g05260	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	Zm.17650.1.A1_at	At3g61210	prolyl 4-hydroxylase	-	6e-4	At2g23096	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.9322.1.A1_at	At3g61210	-	-	6e+0	At5g43070	WPP1 (WPP domain protein 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.11551.1.A1_at	At3g61210	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imi dazole-4-carboxamide isomerase	-	4e-1	At4g17960	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.9542.1.A1_at	At3g61210	hypothetical protein LOC100192045	-	3e-16	At4g16170	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.17192.1.A1_at	At3g61210	-	-	5e+0	At2g22520	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.1240.1.A1_at	At3g61210	hypothetical protein LOC100274890	-	6e-3	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.617.1.A1_at	At3g61210	tonoplast membrane integral protein ZmTIP4-1	-	4e-2	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.15406.1.A1_at	At3g61210	hypothetical protein LOC100191191	-	1e-4	At2g25670	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.18946.1.A1_at	At3g61210	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.2631.1.S1_at	At3g61210	hypothetical protein LOC100191885	-	5e-5	At2g21730	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.15215.1.A1_at	At3g61210	Hypothetical protein LOC100193843	-	1e+0	At5g22870	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.628.1.A1_at	At3g61210	glutathione S-transferase12	-	6e-1	At3g21960	-	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.12530.1.A1_at	At3g61210	-	-	5e+0	At5g38170	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.9975.1.A1_at	At3g61210	-	-	7e-6	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.16178.1.A1_s_at	At3g61210	hypothetical protein LOC100275193 /// hypothetical protein LOC100276703	-	3e-5	At4g39235	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.12528.1.A1_at	At3g61210	hypothetical protein LOC100274560	-	3e+0	At5g50740	metal ion binding	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.3633.2.S1_x_at	At3g61210	APx1 - Cytosolic Ascorbate Peroxidase	-	3e-28	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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