Co-expression analysis

Gene ID	Contig25541_at
Gene name
Homology with Arabidopsis	Similar to At3g61210: embryo-abundant protein-related (HF=1e+0)
Module size	6 genes
NF	0.04
%ile	5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.87	Contig25541_at	Contig25541	-	-	1e+0	At3g61210	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig15956_at	Contig15956	-	-	7e-1	At4g00130	-	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.93	Contig10118_at	Contig10118	-	-	1e-1	At1g53620	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.95	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.94	Contig19576_x_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.94	Contig7061_s_at	Contig7061	-	-	3e-1	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.2	99.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
18.7	99.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.6	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.8	99.6	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
11.1	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.7	99.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.6	97.7	GSM71155	Morex stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.7	96.9	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the wheat gene, Ta.7526.1.S1_a_at, orthologous to the query gene, Contig25541_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.8	Ta.7526.1.S1_a_at	At3g61210	-	-	1e-24	At5g60620	phospholipid/glycerol acyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	Ta.5655.1.S1_at	At3g61210	-	-	2e-1	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.3949.2.S1_at	At3g61210	-	-	2e+0	At5g45700	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.8806.2.S1_at	At3g61210	-	-	5e+0	At1g14130	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.16033.1.S1_s_at	At3g61210	Transcription factor HBP-1a(c14)	-	5e-1	At2g42975	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.30595.1.S1_at	At3g61210	-	-	4e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.8133.1.S1_at	At3g61210	-	-	2e-1	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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