Co-expression analysis

Gene ID	Contig25541_at
Gene name
Homology with Arabidopsis	Similar to At3g61210: embryo-abundant protein-related (HF=1e+0)
Module size	6 genes
NF	0.04
%ile	5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.87	Contig25541_at	Contig25541	-	-	1e+0	At3g61210	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig15956_at	Contig15956	-	-	7e-1	At4g00130	-	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.93	Contig10118_at	Contig10118	-	-	1e-1	At1g53620	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.95	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.94	Contig19576_x_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.94	Contig7061_s_at	Contig7061	-	-	3e-1	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.2	99.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
18.7	99.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.6	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.8	99.6	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
11.1	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.7	99.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.6	97.7	GSM71155	Morex stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.7	96.9	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.3362.1.A1_s_at, orthologous to the query gene, Contig25541_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	Ptp.3362.1.A1_s_at	At3g61210	hypothetical protein	-	2e-95	At5g60620	phospholipid/glycerol acyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.588.1.A1_s_at	At3g61210	hypothetical protein	-	3e-7	At3g50000	CKA2 (CASEIN KINASE II, ALPHA CHAIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.27012.1.S1_s_at	At3g61210	hypothetical protein	-	2e-72	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.202459.1.S1_at	At3g61210	hypothetical protein	-	2e-44	At3g07790	DGCR14-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.7455.2.S1_at	At3g61210	hypothetical protein	-	2e-16	At3g19950	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.70877.1.S1_at	At3g61210	hypothetical protein	-	3e-112	At1g18070	EF-1-alpha-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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