CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig25541_at

Gene name
Homology with Arabidopsis Similar to At3g61210: embryo-abundant protein-related (HF=1e+0)

Module size 6 genes

NF 0.04

%ile 5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.87 Contig25541_at Contig25541 - - 1e+0 At3g61210 embryo-abundant protein-related O.I. H.G. S.X.
0.12 10.4 0.94 Contig15956_at Contig15956 - - 7e-1 At4g00130 - O.I. H.G. S.X.
0.04 3.4 0.93 Contig10118_at Contig10118 - - 1e-1 At1g53620 unknown protein O.I. H.G. S.X.
0.04 3.4 0.95 Contig18744_at Contig18744 - - 2e+0 At5g41630 F-box family protein O.I. H.G. S.X.
0.02 1.8 0.94 Contig19576_x_at Contig19576 - - 5e-1 At2g29910 F-box family protein O.I. H.G. S.X.
0.02 1.8 0.94 Contig7061_s_at Contig7061 - - 3e-1 At1g12440 zinc finger (AN1-like) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.2 99.9 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
18.7 99.7 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.6 99.6 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
16.8 99.6 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
11.1 99.2 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.7 99.2 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7 98.6 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM71156 Morex stress and unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
5.6 97.7 GSM71155 Morex stress and unstress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
4.7 96.9 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the rice gene, Os07g0531600, orthologous to the query gene, Contig25541_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 Os07g0531600 At3g61210 - Phospholipid/glycerol acyltransferase familyprotein 4e-18 At5g60620 phospholipid/glycerol acyltransferase family protein O.I. H.G. S.X.
0.63 82.7 Os02g0776700 At3g61210 - Myb, DNA-binding domain containing protein 1e+0 At1g72650 TRFL6 (TRF-LIKE 6) O.I. H.G. S.X.
0.52 69.6 Os01g0908500 At3g61210 - Mg2+ transporter protein, CorA-like family protein 2e-5 At3g19640 magnesium transporter CorA-like family protein (MRS2-3) O.I. H.G. S.X.
0.48 63.7 Os04g0390000 At3g61210 - 2-oxoglutarate dehydrogenase, E1 component 6e-49 At5g65750 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative O.I. H.G. S.X.
0.46 60.9 Os04g0195000 At3g61210 - Vacuolar assembly protein VPS41 homolog 2e-24 At1g08190 vacuolar assembly protein, putative (VPS41) O.I. H.G. S.X.
0.36 44.0 Os11g0241900 At3g61210 - Protein of unknown function DUF231 domaincontaining protein 1e-6 At5g06230 unknown protein O.I. H.G. S.X.
0.35 41.7 Os03g0223700 At3g61210 - ARM repeat fold domain containing protein 2e-49 At2g01690 binding O.I. H.G. S.X.
0.33 38.8 Os03g0786800 At3g61210 - The start codon is not identified. 4e-54 At5g46210 CUL4 (CULLIN4) O.I. H.G. S.X.
0.33 38.8 Os11g0661400 At3g61210 - AAA ATPase, central region domain containingprotein 9e-37 At1g02890 AAA-type ATPase family protein O.I. H.G. S.X.
0.30 32.7 Os08g0537800 At3g61210 - The start codon is not identified. 4e-2 At2g37600 60S ribosomal protein L36 (RPL36A) O.I. H.G. S.X.
0.26 25.6 Os03g0750800 At3g61210 - Transcriptional adaptor ADA2b (AT4g16420/dl4235c) 9e-11 At4g16420 ADA2B (HOMOLOG OF YEAST ADA2 2B) O.I. H.G. S.X.
0.23 21.2 Os01g0147200 At3g61210 - - 3e-7 At1g32130 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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