Co-expression analysis

Gene ID Contig25477_at
Gene name
Homology with ArabidopsisSimilar to At5g33421: unknown protein (HF=6e+0)
Module size 6 genes
NF 0.42
%ile 58.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig25477_atContig25477--6e+0At5g33421unknown proteinO.I.H.G.S.X.
0.4661.00.96Contig19576_x_atContig19576--5e-1At2g29910F-box family proteinO.I.H.G.S.X.
0.4458.90.96Contig1188_s_atContig1188amylase/protease inhibitor-6e+0At5g05120zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.4053.10.96Contig23564_atContig23564--1e+0At1g09932phosphoglycerate/bisphosphoglycerate mutase-relatedO.I.H.G.S.X.
0.3647.10.96Contig9642_atContig9642--1e-13At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.2326.10.96Contig24772_atContig24772--1e-4At5g63740zinc finger protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.099.7GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.299.4GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.898.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.797.7GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.097.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.696.8GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.596.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.596.7GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.496.6GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
4.296.3GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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